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Title
Orphan CpG islands define a novel class of highly active enhancers
Authors
Keywords
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Journal
Epigenetics
Volume 12, Issue 6, Pages 449-464
Publisher
Informa UK Limited
Online
2017-04-28
DOI
10.1080/15592294.2017.1297910
References
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Note: Only part of the references are listed.- Frequent hypermethylation of orphan CpG islands with enhancer activity in cancer
- (2016) Min Gyun Bae et al. BMC Medical Genomics
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- (2016) Phillippa C. Taberlay et al. GENOME RESEARCH
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- (2016) Fumitaka Inoue et al. GENOME RESEARCH
- Plasma cell differentiation is coupled to division-dependent DNA hypomethylation and gene regulation
- (2016) Benjamin G Barwick et al. NATURE IMMUNOLOGY
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- (2016) Dongxue Wang et al. NUCLEIC ACIDS RESEARCH
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- (2016) Kevin C. Johnson et al. Nature Communications
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- (2015) Diego Villar et al. CELL
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- (2015) Kate Beishline et al. FEBS Journal
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- (2015) Kasper D. Rasmussen et al. GENES & DEVELOPMENT
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- (2015) Wendy A. Kellner et al. GENOME RESEARCH
- Whole-genome bisulfite sequencing maps from multiple human tissues reveal novel CpG islands associated with tissue-specific regulation
- (2015) Isabel Mendizabal et al. HUMAN MOLECULAR GENETICS
- Convergence of Developmental and Oncogenic Signaling Pathways at Transcriptional Super-Enhancers
- (2015) Denes Hnisz et al. MOLECULAR CELL
- Integrative analysis of 111 reference human epigenomes
- (2015) Anshul Kundaje et al. NATURE
- Identification of active transcriptional regulatory elements from GRO-seq data
- (2015) Charles G Danko et al. NATURE METHODS
- SEA: a super-enhancer archive
- (2015) Yanjun Wei et al. NUCLEIC ACIDS RESEARCH
- JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles
- (2015) Anthony Mathelier et al. NUCLEIC ACIDS RESEARCH
- Disruption of CTCF/cohesin-mediated high-order chromatin structures by DNA methylation downregulates PTGS2 expression
- (2015) J Y Kang et al. ONCOGENE
- High-throughput and quantitative assessment of enhancer activity in mammals by CapStarr-seq
- (2015) Laurent Vanhille et al. Nature Communications
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- (2014) Robert C. Brewster et al. CELL
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- (2014) Suhas S.P. Rao et al. CELL
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- (2014) R. P. Nagarajan et al. GENOME RESEARCH
- Coregulation of Transcription Factor Binding and Nucleosome Occupancy through DNA Features of Mammalian Enhancers
- (2014) Iros Barozzi et al. MOLECULAR CELL
- 5mC Oxidation by Tet2 Modulates Enhancer Activity and Timing of Transcriptome Reprogramming during Differentiation
- (2014) Gary C. Hon et al. MOLECULAR CELL
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- (2014) Leighton J Core et al. NATURE GENETICS
- FIREWACh: high-throughput functional detection of transcriptional regulatory modules in mammalian cells
- (2014) Matthew Murtha et al. NATURE METHODS
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- (2013) Denes Hnisz et al. CELL
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- (2013) Wen Liu et al. CELL
- Dynamic Readers for 5-(Hydroxy)Methylcytosine and Its Oxidized Derivatives
- (2013) Cornelia G. Spruijt et al. CELL
- The role of chromatin insulators in nuclear architecture and genome function
- (2013) Kevin Van Bortle et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
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- (2013) Tao Wang et al. NATURE CELL BIOLOGY
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- (2013) Yiwei Liu et al. TRENDS IN BIOCHEMICAL SCIENCES
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- (2013) María J. Barrero et al. Cell Reports
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- (2013) Michael Lawrence et al. PLoS Computational Biology
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- (2013) Dvir Aran et al. GENOME BIOLOGY
- The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
- (2012) T. Derrien et al. GENOME RESEARCH
- GENCODE: The reference human genome annotation for The ENCODE Project
- (2012) J. Harrow et al. GENOME RESEARCH
- ChIA-PET analysis of transcriptional chromatin interactions
- (2012) Jingyao Zhang et al. METHODS
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- (2012) Paul A. Ginno et al. MOLECULAR CELL
- Comprehensive molecular portraits of human breast tumours
- (2012) Daniel C. Koboldt et al. NATURE
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- (2012) Jesse R. Dixon et al. NATURE
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- Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters
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