An outbreak of Shiga toxin-producing Escherichia coli O157:H7 associated with contaminated salad leaves: epidemiological, genomic and food trace back investigations

An outbreak of Shiga toxin-producing Escherichia coli serogroup O157 linked to a lamb-feeding event

(2016) S. ROWELL et al.   EPIDEMIOLOGY AND INFECTION

Whole genome sequencing improved case ascertainment in an outbreak of Shiga toxin-producing Escherichia coli O157 associated with raw drinking milk

(2016) H. BUTCHER et al.   EPIDEMIOLOGY AND INFECTION

Epidemiological and Microbiological Investigation of an Outbreak of Severe Disease from Shiga Toxin–Producing Escherichia coli O157 Infection Associated with Consumption of a Slaw Garnish

(2016) LISA BYRNE et al.   JOURNAL OF FOOD PROTECTION

Public Health Investigation of Two Outbreaks of Shiga Toxin-Producing Escherichia coli O157 Associated with Consumption of Watercress

(2015) Claire Jenkins et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Whole-Genome Sequencing for National Surveillance of Shiga Toxin–ProducingEscherichia coliO157

(2015) Timothy J. Dallman et al.   CLINICAL INFECTIOUS DISEASES

A large Great Britain-wide outbreak of STEC O157 phage type 8 linked to handling of raw leeks and potatoes

(2015) N. LAUNDERS et al.   EPIDEMIOLOGY AND INFECTION

The epidemiology, microbiology and clinical impact of Shiga toxin-producing Escherichia coli in England, 2009–2012

(2015) L. BYRNE et al.   EPIDEMIOLOGY AND INFECTION

Rapid and Easy In Silico Serotyping of Escherichia coli Isolates by Use of Whole-Genome Sequencing Data

(2015) Katrine G. Joensen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Enterohemorrhagic Escherichia coli Exploits EspA Filaments for Attachment to Salad Leaves

(2008) R. K. Shaw et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A Large Escherichia coli O157 Outbreak in Sweden Associated with Locally Produced Lettuce

(2008) A. Söderström et al.   Foodborne Pathogens and Disease