Temporal and spatial variations in the composition of freshwater photosynthetic picoeukaryotes revealed by MiSeq sequencing from flow cytometry sorted samples

Unexpected predominance of photosynthetic picoeukaryotes in shallow eutrophic lakes

(2016) Shengnan Li et al.   JOURNAL OF PLANKTON RESEARCH

Marked seasonality and high spatial variability of protist communities in shallow freshwater systems

(2015) Marianne Simon et al.   ISME Journal

Evidence for an active rare biosphere within freshwater protists community

(2015) Didier Debroas et al.   MOLECULAR ECOLOGY

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Rarity in aquatic microbes: placing protists on the map

(2015) Ramiro Logares et al.   RESEARCH IN MICROBIOLOGY

High protists diversity in the plankton of sulfurous lakes and lagoons examined by 18s rRNA gene sequence analyses

(2015) Xavier Triadó-Margarit et al.   Environmental Microbiology Reports

Seasonal and spatial patterns of microbial diversity along a trophic gradient in the interconnected lakes of the Osterseen Lake District, Bavaria

(2015) Katrin Zwirglmaier et al.   Frontiers in Microbiology

Complex communities of small protists and unexpected occurrence of typical marine lineages in shallow freshwater systems

(2014) Marianne Simon et al.   ENVIRONMENTAL MICROBIOLOGY

Ecological functions of zoosporic hyperparasites

(2014) Frank H. Gleason et al.   Frontiers in Microbiology

Geographic distance and ecosystem size determine the distribution of smallest protists in lacustrine ecosystems

(2013) Cécile Lepère et al.   FEMS MICROBIOLOGY ECOLOGY

Exploring the uncultured microeukaryote majority in the oceans: reevaluation of ribogroups within stramenopiles

(2013) Ramon Massana et al.   ISME Journal

Phylogenetic Affiliation of SSU rRNA Genes Generated by Massively Parallel Sequencing: New Insights into the Freshwater Protist Diversity

(2013) Najwa Taib et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Structure of the rare archaeal biosphere and seasonal dynamics of active ecotypes in surface coastal waters

(2013) M. Hugoni et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Morphology, Genome Plasticity, and Phylogeny in the Genus Ostreococcus Reveal a Cryptic Species, O. mediterraneus sp. nov. (Mamiellales, Mamiellophyceae)

(2013) Lucie Subirana et al.   PROTIST

In situinteractions between photosynthetic picoeukaryotes and bacterioplankton in the Atlantic Ocean: evidence for mixotrophy

(2013) Manuela Hartmann et al.   Environmental Microbiology Reports

Parasites Affect Food Web Structure Primarily through Increased Diversity and Complexity

(2013) Jennifer A. Dunne et al.   PLOS BIOLOGY

Phytoplankton chytridiomycosis: community structure and infectivity of fungal parasites in aquatic ecosystems

(2012) Serena Rasconi et al.   ENVIRONMENTAL MICROBIOLOGY

Short-term dynamics of diversity patterns: evidence of continual reassembly within lacustrine small eukaryotes

(2012) Jean-François Mangot et al.   ENVIRONMENTAL MICROBIOLOGY

Composition of the summer photosynthetic pico and nanoplankton communities in the Beaufort Sea assessed by T-RFLP and sequences of the 18S rRNA gene from flow cytometry sorted samples

(2012) Sergio Balzano et al.   ISME Journal

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Mixotrophic basis of Atlantic oligotrophic ecosystems

(2012) M. Hartmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pyrosequencing analysis of the protist communities in a High Arctic meromictic lake: DNA preservation and change

(2012) Sophie Charvet et al.   Frontiers in Microbiology

Diversity and seasonal dynamics of the photoautotrophic picoplankton in Lake Balaton (Hungary)

(2011) T Felföldi et al.   AQUATIC MICROBIAL ECOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Genetic diversity of picoeukaryotes in eight lakes differing in trophic status

(2011) Biying Zhao et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Invariable biomass-specific primary production of taxonomically discrete picoeukaryote groups across the Atlantic Ocean

(2011) Carolina Grob et al.   ENVIRONMENTAL MICROBIOLOGY

Basin-scale distribution patterns of photosynthetic picoeukaryotes along an Atlantic Meridional Transect

(2011) Amy R. Kirkham et al.   ENVIRONMENTAL MICROBIOLOGY

Global distribution patterns of distinct clades of the photosynthetic picoeukaryote Ostreococcus

(2011) Elif Demir-Hilton et al.   ISME Journal

Chloroparva pannonica gen. et sp. nov. (Trebouxiophyceae, Chlorophyta) – a new picoplanktonic green alga from a turbid, shallow soda pan

(2011) Boglárka Somogyi et al.   PHYCOLOGIA

Plastid 16S rRNA Gene Diversity among Eukaryotic Picophytoplankton Sorted by Flow Cytometry from the South Pacific Ocean

(2011) Xiao Li Shi et al.   PLoS One

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Use of  flow cytometric sorting to better assess the diversity of small photosynthetic eukaryotes in the English Channel

(2010) Dominique Marie et al.   FEMS MICROBIOLOGY ECOLOGY

Editorial: ‘Disregarded’ microbial diversity and ecological potentials in aquatic systems: a new paradigm shift ahead

(2010) Télesphore Sime-Ngando et al.   HYDROBIOLOGIA

Molecular and microscopic diversity of planktonic eukaryotes in the oligotrophic Lake Stechlin (Germany)

(2010) W. Luo et al.   HYDROBIOLOGIA

Vertical structure of small eukaryotes in three lakes that differ by their trophic status: a quantitative approach

(2010) Cecile Lepère et al.   ISME Journal

Significant CO2 fixation by small prymnesiophytes in the subtropical and tropical northeast Atlantic Ocean

(2010) Ludwig Jardillier et al.   ISME Journal

Contrasting seasonal niche separation between rare and abundant taxa conceals the extent of protist diversity

(2010) VIOLA NOLTE et al.   MOLECULAR ECOLOGY

Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms

(2010) RALPH MEDINGER et al.   MOLECULAR ECOLOGY

Winter bloom of picoeukaryotes in Hungarian shallow turbid soda pans and the role of light and temperature

(2009) Boglárka Somogyi et al.   AQUATIC ECOLOGY

A five-year study of autotrophic winter picoplankton in Lake Balaton, Hungary

(2009) Lajos Vörös et al.   AQUATIC ECOLOGY

Photosynthetic picoeukaryote community structure in the South East Pacific Ocean encompassing the most oligotrophic waters on Earth

(2009) Cécile Lepère et al.   ENVIRONMENTAL MICROBIOLOGY

Morphological, genetic and mating diversity within the widespread bioindicator Nitzschia palea (Bacillariophyceae)

(2009) Rosa Trobajo et al.   PHYCOLOGIA

Groups without Cultured Representatives Dominate Eukaryotic Picophytoplankton in the Oligotrophic South East Pacific Ocean

(2009) Xiao Li Shi et al.   PLoS One

Unexpected Importance of Potential Parasites in the Composition of the Freshwater Small-Eukaryote Community

(2008) C. Lepere et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Quantification of Diatom and Dinoflagellate Biomasses in Coastal Marine Seawater Samples by Real-Time PCR

(2008) A. Godhe et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Wide genetic diversity of picoplanktonic green algae (Chloroplastida) in the Mediterranean Sea uncovered by a phylum-biased PCR approach

(2008) Manon Viprey et al.   ENVIRONMENTAL MICROBIOLOGY

The Molecular Diversity of Freshwater Picoeukaryotes Reveals High Occurrence of Putative Parasitoids in the Plankton

(2008) Emilie Lefèvre et al.   PLoS One

Aurearenophyceae classis nova, a New Class of Heterokontophyta Based on a New Marine Unicellular Alga Aurearena cruciata gen. et sp. nov. Inhabiting Sandy Beaches

(2008) Atsushi Kai et al.   PROTIST