Interrogating marine virus-host interactions and elemental transfer with BONCAT and nanoSIMS-based methods

Autotrophic and heterotrophic acquisition of carbon and nitrogen by a mixotrophic chrysophyte established through stable isotope analysis

(2017) Ramon Terrado et al.   ISME Journal

Chemical microenvironments and single-cell carbon and nitrogen uptake in field-collected colonies of Trichodesmium under different pCO2

(2017) Meri J Eichner et al.   ISME Journal

Virus-host relationships of marine single-celled eukaryotes resolved from metatranscriptomics

(2017) Mohammad Moniruzzaman et al.   Nature Communications

Plankton networks driving carbon export in the oligotrophic ocean

(2016) Lionel Guidi et al.   NATURE

Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses

(2016) Simon Roux et al.   NATURE

SutA is a bacterial transcription factor expressed during slow growth inPseudomonas aeruginosa

(2016) Brett M. Babin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Visualizing in situ translational activity for identifying and sorting slow-growing archaeal−bacterial consortia

(2016) Roland Hatzenpichler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Time-resolved proteomic analysis of quorum sensing in Vibrio harveyi

(2016) John D. Bagert et al.   Chemical Science

Towards quantitative viromics for both double-stranded and single-stranded DNA viruses

(2016) Simon Roux et al.   PeerJ

The interactive microbial ocean

(2016) Corina P. D. Brussaard et al.   Nature Microbiology

Heavy water and15N labelling with NanoSIMS analysis reveals growth rate-dependent metabolic heterogeneity in chemostats

(2015) Sebastian H. Kopf et al.   ENVIRONMENTAL MICROBIOLOGY

Rising to the challenge: accelerated pace of discovery transforms marine virology

(2015) Jennifer R. Brum et al.   NATURE REVIEWS MICROBIOLOGY

2016 update of the PRIDE database and its related tools

(2015) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

Patterns and ecological drivers of ocean viral communities

(2015) J. R. Brum et al.   SCIENCE

Zooplankton May Serve as Transmission Vectors for Viruses Infecting Algal Blooms in the Ocean

(2014) Miguel José Frada et al.   CURRENT BIOLOGY

In situvisualization of newly synthesized proteins in environmental microbes using amino acid tagging and click chemistry

(2014) Roland Hatzenpichler et al.   ENVIRONMENTAL MICROBIOLOGY

Depth-stratified functional and taxonomic niche specialization in the ‘core’ and ‘flexible’ Pacific Ocean Virome

(2014) Bonnie L Hurwitz et al.   ISME Journal

Single-cell and population level viral infection dynamics revealed by phageFISH, a method to visualize intracellular and free viruses

(2013) Elke Allers et al.   ENVIRONMENTAL MICROBIOLOGY

Responses of the coastal bacterial community to viral infection of the algae Phaeocystis globosa

(2013) Abdul R Sheik et al.   ISME Journal

A Stable-Isotope Mass Spectrometry-Based Metabolic Footprinting Approach to Analyze Exudates from Phytoplankton

(2013) Ralf Weber et al.   Marine Drugs

Abundant SAR11 viruses in the ocean

(2013) Yanlin Zhao et al.   NATURE

Genome of a SAR116 bacteriophage shows the prevalence of this phage type in the oceans

(2013) I. Kang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Twelve previously unknown phage genera are ubiquitous in global oceans

(2013) K. Holmfeldt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A method for evaluating the host range of bacteriophages using phages fluorescently labeled with 5-ethynyl-2′-deoxyuridine (EdU)

(2012) Sayaka Ohno et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Look@NanoSIMS - a tool for the analysis of nanoSIMS data in environmental microbiology

(2012) Lubos Polerecky et al.   ENVIRONMENTAL MICROBIOLOGY

Viral infection ofPhaeocystis globosaimpedes release of chitinous star-like structures: quantification using single cell approaches

(2012) A. R. Sheik et al.   ENVIRONMENTAL MICROBIOLOGY

Identification of a novel cyanobacterial group as active diazotrophs in a coastal microbial mat using NanoSIMS analysis

(2012) Dagmar Woebken et al.   ISME Journal

Are we missing half of the viruses in the ocean?

(2012) Grieg F Steward et al.   ISME Journal

Host-virus dynamics and subcellular controls of cell fate in a natural coccolithophore population

(2012) A. Vardi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Marine Viruses: Truth or Dare

(2011) Mya Breitbart   Annual Review of Marine Science

Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment

(2011) Jürgen Cox et al.   JOURNAL OF PROTEOME RESEARCH

A simple method for Alexa Fluor dye labelling of dengue virus

(2010) Summer Li-Xin Zhang et al.   JOURNAL OF VIROLOGICAL METHODS

Preferential grazing of Oxyrrhis marina on virus infected Emiliania huxleyi

(2010) Claire Evans et al.   LIMNOLOGY AND OCEANOGRAPHY

Patterns of15N assimilation and growth of methanotrophic ANME-2 archaea and sulfate-reducing bacteria within structured syntrophic consortia revealed by FISH-SIMS

(2009) Victoria J. Orphan et al.   ENVIRONMENTAL MICROBIOLOGY

A novel symbiosis between chemoautotrophic bacteria and a freshwater cave amphipod

(2009) Sharmishtha Dattagupta et al.   ISME Journal

Accuracy and precision in quantitative fluorescence microscopy

(2009) Jennifer C. Waters   JOURNAL OF CELL BIOLOGY

A unicellular algal virus, Emiliania huxleyi virus 86, exploits an animal-like infection strategy

(2009) L. C. M. Mackinder et al.   JOURNAL OF GENERAL VIROLOGY

Universal sample preparation method for proteome analysis

(2009) Jacek R Wiśniewski et al.   NATURE METHODS

Deep-Sea Archaea Fix and Share Nitrogen in Methane-Consuming Microbial Consortia

(2009) A. E. Dekas et al.   SCIENCE

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

A single-cell view on the ecophysiology of anaerobic phototrophic bacteria

(2008) N. Musat et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA