Evidence for H2 consumption by uncultured Desulfobacterales in coastal sediments

Permeability shapes bacterial communities in sublittoral surface sediments

(2017) D. Probandt et al.   ENVIRONMENTAL MICROBIOLOGY

metaSPAdes: a new versatile metagenomic assembler

(2017) Sergey Nurk et al.   GENOME RESEARCH

Syntrophic linkage between predatory Carpediemonas and specific prokaryotic populations

(2017) Emmo Hamann et al.   ISME Journal

Genomic repertoire of the Woeseiaceae/JTB255, cosmopolitan and abundant core members of microbial communities in marine sediments

(2017) Marc Mußmann et al.   ISME Journal

Ubiquitous Gammaproteobacteria dominate dark carbon fixation in coastal sediments

(2016) Stefan Dyksma et al.   ISME Journal

Environmental Breviatea harbour mutualistic Arcobacter epibionts

(2016) Emmo Hamann et al.   NATURE

Hydrogen Utilization Potential in Subsurface Sediments

(2016) Rishi R. Adhikari et al.   Frontiers in Microbiology

HydDB: A web tool for hydrogenase classification and analysis

(2016) Dan Søndergaard et al.   Scientific Reports

Use of carbon monoxide and hydrogen by a bacteria-animal symbiosis from seagrass sediments

(2015) Manuel Kleiner et al.   ENVIRONMENTAL MICROBIOLOGY

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Genomic and metagenomic surveys of hydrogenase distribution indicate H2 is a widely utilised energy source for microbial growth and survival

(2015) Chris Greening et al.   ISME Journal

UnculturedDesulfobacteraceaeand Crenarchaeotal group C3 incorporate13C-acetate in coastal marine sediment

(2015) Hyunsoo Na et al.   Environmental Microbiology Reports

Identification ofDesulfobacteralesas primary hydrogenotrophs in a complex microbial mat community

(2014) L. C. Burow et al.   Geobiology

Bacterial and Archaeal Communities in Sediments of the North Chinese Marginal Seas

(2014) Jiwen Liu et al.   MICROBIAL ECOLOGY

Fermentation couples Chloroflexi and sulfate-reducing bacteria to Cyanobacteria in hypersaline microbial mats

(2014) Jackson Z. Lee et al.   Frontiers in Microbiology

Analysis of the bacterial community in the two typical intertidal sediments of Bohai Bay, China by pyrosequencing

(2013) Liping Wang et al.   MARINE POLLUTION BULLETIN

Bacterial community structure and its regulating factors in the intertidal sediment along the Liaodong Bay of Bohai Sea, China

(2013) Binghui Zheng et al.   MICROBIOLOGICAL RESEARCH

Structure, function and biosynthesis of O2-tolerant hydrogenases

(2013) Johannes Fritsch et al.   NATURE REVIEWS MICROBIOLOGY

Evolution and diversification of Group 1 [NiFe] hydrogenases. Is there a phylogenetic marker for O2-tolerance?

(2012) Maria-Eirini Pandelia et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Metaproteomics of a gutless marine worm and its symbiotic microbial community reveal unusual pathways for carbon and energy use

(2012) M. Kleiner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Binning of Metagenomic Contigs for Microbial Physiology of Mixed Cultures

(2012) Marc Strous et al.   Frontiers in Microbiology

[NiFe] Hydrogenase fromAlteromonas macleodiiwith Unusual Stability in the Presence of Oxygen and High Temperature

(2011) Walter A. Vargas et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Hydrogen production in photosynthetic microbial mats in the Elkhorn Slough estuary, Monterey Bay

(2011) Luke C Burow et al.   ISME Journal

A unique iron-sulfur cluster is crucial for oxygen tolerance of a [NiFe]-hydrogenase

(2011) Tobias Goris et al.   Nature Chemical Biology

IMG: the integrated microbial genomes database and comparative analysis system

(2011) V. M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

Universally Distributed Single-Copy Genes Indicate a Constant Rate of Horizontal Transfer

(2011) Christopher J. Creevey et al.   PLoS One

Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean

(2011) B. K. Swan et al.   SCIENCE

Novel groups of Gammaproteobacteria catalyse sulfur oxidation and carbon fixation in a coastal, intertidal sediment

(2010) Sabine Lenk et al.   ENVIRONMENTAL MICROBIOLOGY

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Functioning of intertidal flats inferred from temporal and spatial dynamics of O2, H2S and pH in their surface sediment

(2009) Stefan Jansen et al.   OCEAN DYNAMICS

Response of fermentation and sulfate reduction to experimental temperature changes in temperate and Arctic marine sediments

(2008) Niko Finke et al.   ISME Journal