Chemosynthetic symbionts of marine invertebrate animals are capable of nitrogen fixation

Closely coupled evolutionary history of ecto- and endosymbionts from two distantly related animal phyla

(2016) Judith Zimmermann et al.   MOLECULAR ECOLOGY

Use of carbon monoxide and hydrogen by a bacteria-animal symbiosis from seagrass sediments

(2015) Manuel Kleiner et al.   ENVIRONMENTAL MICROBIOLOGY

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Functional significance of dinitrogen fixation in sustaining coral productivity under oligotrophic conditions

(2015) Ulisse Cardini et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Discovery of symbiotic nitrogen fixation and chemoautotrophy in cold-water corals

(2015) Jack J. Middelburg et al.   Scientific Reports

gbtools: Interactive Visualization of Metagenome Bins in R

(2015) Brandon K. B. Seah et al.   Frontiers in Microbiology

ARBitrator: a software pipeline for on-demand retrieval of auto-curated nifH sequences from GenBank

(2014) Philip Heller et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Evolutionary radiation of shallow-water Lucinidae (Bivalvia with endosymbionts) as a result of the rise of seagrasses and mangroves

(2014) Steven M. Stanley   GEOLOGY

Nutritional and reproductive strategies in a chemosymbiotic bivalve living in a tropical intertidal seagrass bed

(2014) M van der Geest et al.   MARINE ECOLOGY PROGRESS SERIES

ProteomeXchange provides globally coordinated proteomics data submission and dissemination

(2014) Juan A Vizcaíno et al.   NATURE BIOTECHNOLOGY

Size-independent symmetric division in extraordinarily long cells

(2014) Nika Pende et al.   Nature Communications

A comprehensive aligned nifH gene database: a multipurpose tool for studies of nitrogen-fixing bacteria

(2014) John Christian Gaby et al.   Database-The Journal of Biological Databases and Curation

Benthic N2fixation in coral reefs and the potential effects of human-induced environmental change

(2014) Ulisse Cardini et al.   Ecology and Evolution

Seasonal changes in mollusc abundance in a tropical intertidal ecosystem, Banc d'Arguin (Mauritania): Testing the ‘depletion by shorebirds’ hypothesis

(2013) Mohamed Vall Ahmedou Salem et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Nitrogen fixation in distinct microbial niches within a chemoautotrophy-driven cave ecosystem

(2013) Mahesh S Desai et al.   ISME Journal

Characterizing the plasticity of nitrogen metabolism by the host and symbionts of the hydrothermal vent chemoautotrophic symbiosesRidgeia piscesae

(2013) Li Liao et al.   MOLECULAR ECOLOGY

Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2

(2012) Martin Wu et al.   BIOINFORMATICS

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Accounting For Alignment Uncertainty in Phylogenomics

(2012) Martin Wu et al.   PLoS One

Metaproteomics of a gutless marine worm and its symbiotic microbial community reveal unusual pathways for carbon and energy use

(2012) M. Kleiner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Three-Stage Symbiosis Forms the Foundation of Seagrass Ecosystems

(2012) T. van der Heide et al.   SCIENCE

The Binning of Metagenomic Contigs for Microbial Physiology of Mixed Cultures

(2012) Marc Strous et al.   Frontiers in Microbiology

Suitability of calcein as an in situ growth marker in burrowing bivalves

(2011) Matthijs van der Geest et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Hydrogen is an energy source for hydrothermal vent symbioses

(2011) Jillian M. Petersen et al.   NATURE

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations

(2010) Federico Abascal et al.   NUCLEIC ACIDS RESEARCH

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Nitrogen fixation and nitrogen transformations in marine symbioses

(2010) Cara L. Fiore et al.   TRENDS IN MICROBIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Improvements to the Percolator Algorithm for Peptide Identification from Shotgun Proteomics Data Sets

(2009) Marina Spivak et al.   JOURNAL OF PROTEOME RESEARCH

Universal sample preparation method for proteome analysis

(2009) Jacek R Wiśniewski et al.   NATURE METHODS

Metagenome of a Versatile Chemolithoautotroph from Expanding Oceanic Dead Zones

(2009) D. A. Walsh et al.   SCIENCE

Raman microspectrometry sulfur detection and characterization in the marine ectosymbiotic nematode Eubostrichus dianae (Desmodoridae, Stilbonematidae)

(2008) David Himmel et al.   BIOLOGY OF THE CELL

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Symbiotic diversity in marine animals: the art of harnessing chemosynthesis

(2008) Nicole Dubilier et al.   NATURE REVIEWS MICROBIOLOGY