The dissemination of multidrug-resistant Enterobacter cloacae throughout the UK and Ireland

Carbapenemase-producing Enterobacteriaceae in hospital wastewater: a reservoir that may be unrelated to clinical isolates

(2016) L. White et al.   JOURNAL OF HOSPITAL INFECTION

Roary: rapid large-scale prokaryote pan genome analysis

(2015) Andrew J. Page et al.   BIOINFORMATICS

The initial state of the human gut microbiome determines its reshaping by antibiotics

(2015) Frédéric Raymond et al.   ISME Journal

A Year of Infection in the Intensive Care Unit: Prospective Whole Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic Transmissions and Novel Microbiota

(2015) David J. Roach et al.   PLoS Genetics

Enterobacter aerogenes and Enterobacter cloacae; versatile bacterial pathogens confronting antibiotic treatment

(2015) Anne Davin-Regli et al.   Frontiers in Microbiology

Outbreak of AmpC β-lactamase-hyper-producing Enterobacter cloacae in a neonatal intensive care unit in a French teaching hospital

(2014) Nathalie Pestourie et al.   AMERICAN JOURNAL OF INFECTION CONTROL

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

MLST reveals potentially high-risk international clones of Enterobacter cloacae*

(2014) R. Izdebski et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

(2014) Nicholas J. Croucher et al.   NUCLEIC ACIDS RESEARCH

SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

(2014) Michael Inouye et al.   Genome Medicine

Kraken: ultrafast metagenomic sequence classification using exact alignments

(2014) Derrick E Wood et al.   GENOME BIOLOGY

Intercontinental spread of OXA-48 beta-lactamase-producing Enterobacteriaceae over a 11-year period, 2001 to 2011

(2013) A Potron et al.   Eurosurveillance

Multilocus Sequence Typing (MLST) for Characterization of Enterobacter cloacae

(2013) Tohru Miyoshi-Akiyama et al.   PLoS One

Enterobacter cloacaecomplex: clinical impact and emerging antibiotic resistance

(2012) Maria Lina Mezzatesta et al.   Future Microbiology

Complete Genome Sequence of the Endophytic Enterobacter cloacae subsp. cloacae Strain ENHKU01

(2012) W.-Y. Liu et al.   JOURNAL OF BACTERIOLOGY

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: an international expert proposal for interim standard definitions for acquired resistance

(2011) A.-P. Magiorakos et al.   CLINICAL MICROBIOLOGY AND INFECTION

Degradation of hexadecane by Enterobacter cloacae strain TU that secretes an exopolysaccharide as a bioemulsifier

(2010) Xiufu Hua et al.   CHEMOSPHERE

Reconstructing disease outbreaks from genetic data: a graph approach

(2010) T Jombart et al.   HEREDITY

Complete Genome Sequence of Enterobacter cloacae subsp. cloacae Type Strain ATCC 13047

(2010) Y. Ren et al.   JOURNAL OF BACTERIOLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Evolution of MRSA During Hospital Transmission and Intercontinental Spread

(2010) S. R. Harris et al.   SCIENCE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Molecular Survey of  -Lactamases Conferring Resistance to Newer  -Lactams in Enterobacteriaceae Isolates from Polish Hospitals

(2008) J. Empel et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Investigation of an outbreak of Enterobacter cloacae in a neonatal unit and review of the literature

(2008) M. Dalben et al.   JOURNAL OF HOSPITAL INFECTION