Influence of maternal breast milk ingestion on acquisition of the intestinal microbiome in preterm infants

A two-part mixed-effects model for analyzing longitudinal microbiome compositional data

(2016) Eric Z. Chen et al.   BIOINFORMATICS

The very low birth weight infant microbiome and childhood health

(2015) Maureen W. Groer et al.   BIRTH DEFECTS RESEARCH PART C-EMBRYO TODAY-REVIEWS

The Dynamics of the Human Infant Gut Microbiome in Development and in Progression toward Type 1 Diabetes

(2015) Aleksandar D. Kostic et al.   Cell Host & Microbe

Effect of gestation length on the levels of five innate defence proteins in human milk

(2015) Marita Broadhurst et al.   EARLY HUMAN DEVELOPMENT

Why Is Initial Bacterial Colonization of the Intestine Important to Infantsʼ and Childrenʼs Health?

(2015) Pearl D. Houghteling et al.   JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION

Causes and Timing of Death in Extremely Premature Infants from 2000 through 2011

(2015) Ravi M. Patel et al.   NEW ENGLAND JOURNAL OF MEDICINE

Human milk oligosaccharides in premature infants: absorption, excretion and influence on the intestinal microbiota

(2015) Mark A. Underwood et al.   PEDIATRIC RESEARCH

Temporal and spatial variation of the human microbiota during pregnancy

(2015) Daniel B. DiGiulio et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Infant gut immunity: a preliminary study of IgA associations with breastfeeding

(2015) S. L. Bridgman et al.   Journal of Developmental Origins of Health and Disease

Longitudinal Analysis of the Premature Infant Intestinal Microbiome Prior to Necrotizing Enterocolitis: A Case-Control Study

(2015) Yanjiao Zhou et al.   PLoS One

Life at the beginning: perturbation of the microbiota by antibiotics in early life and its role in health and disease

(2014) Sebastian Zeissig et al.   NATURE IMMUNOLOGY

Toll-like receptor-4 in human and mouse colonic epithelium is developmentally regulated: a possible role in necrotizing enterocolitis

(2014) Di Meng et al.   PEDIATRIC RESEARCH

Probiotics (Lactobacillus acidophilus and Bifidobacterium bifidum) prevent NEC in VLBW infants fed breast milk but not formula

(2014) Andreas Repa et al.   PEDIATRIC RESEARCH

Patterned progression of bacterial populations in the premature infant gut

(2014) P. S. La Rosa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Breast-fed and bottle-fed infant rhesus macaques develop distinct gut microbiotas and immune systems

(2014) A. Ardeshir et al.   Science Translational Medicine

Beneficial effects of human milk oligosaccharides on gut microbiota

(2014) S. Musilova et al.   Beneficial Microbes

Microbes in the neonatal intensive care unit resemble those found in the gut of premature infants

(2014) Brandon Brooks et al.   Microbiome

Immunosuppressive CD71+ erythroid cells compromise neonatal host defence against infection

(2013) Shokrollah Elahi et al.   NATURE

Influence of Prolonged Storage Process, Pasteurization, and Heat Treatment on Biologically-active Human Milk Proteins

(2013) Jih-Chin Chang et al.   Pediatrics and Neonatology

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

The role of gut microbiota in programming the immune phenotype

(2013) M. Weng et al.   Journal of Developmental Origins of Health and Disease

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

New Insights in Gut Microbiota Establishment in Healthy Breast Fed Neonates

(2012) Ted Jost et al.   PLoS One

A metagenomic study of diet-dependent interaction between gut microbiota and host in infants reveals differences in immune response

(2012) Scott Schwartz et al.   GENOME BIOLOGY

Long-term Expansion of Epithelial Organoids From Human Colon, Adenoma, Adenocarcinoma, and Barrett's Epithelium

(2011) Toshiro Sato et al.   GASTROENTEROLOGY

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

The Role of Microbes in Developmental Immunologic Programming

(2011) Jess L Kaplan et al.   PEDIATRIC RESEARCH

The Mechanism of Excessive Intestinal Inflammation in Necrotizing Enterocolitis: An Immature Innate Immune Response

(2011) Nanda Nanthakumar et al.   PLoS One

The Host Defense Proteome of Human and Bovine Milk

(2011) Kasper Hettinga et al.   PLoS One

Characterization of the Diversity and Temporal Stability of Bacterial Communities in Human Milk

(2011) Katherine M. Hunt et al.   PLoS One

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Probiotics and the gut microbiota in intestinal health and disease

(2010) Mélanie G. Gareau et al.   Nature Reviews Gastroenterology & Hepatology

Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns

(2010) M. G. Dominguez-Bello et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Academy of Breastfeeding Medicine Founder's Lecture 2008: Breastfeeding—An Extrauterine Link Between Mother and Child

(2009) Samuli Rautava et al.   Breastfeeding Medicine

Breast-feeding: A Commentary by the ESPGHAN Committee on Nutrition

(2009) Carlo Agostoni et al.   JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION

Association of Preterm Birth With Long-term Survival, Reproduction, and Next-Generation Preterm Birth

(2008) Geeta K. Swamy   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Management and Outcomes of Very Low Birth Weight

(2008) Eric C. Eichenwald et al.   NEW ENGLAND JOURNAL OF MEDICINE