Galaxy-M: a Galaxy workflow for processing and analyzing direct infusion and liquid chromatography mass spectrometry-based metabolomics data

Non-targeted metabolomics and lipidomics LC–MS data from maternal plasma of 180 healthy pregnant women

(2015) Hemi Luan et al.   GigaScience

Workflow4Metabolomics: a collaborative research infrastructure for computational metabolomics

(2014) F. Giacomoni et al.   BIOINFORMATICS

Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations

(2014) Gloria M Sheynkman et al.   BMC GENOMICS

Pregnancy-Induced Metabolic Phenotype Variations in Maternal Plasma

(2014) Hemi Luan et al.   JOURNAL OF PROTEOME RESEARCH

Dissemination of scientific software with Galaxy ToolShed

(2014) Daniel Blankenberg et al.   GENOME BIOLOGY

Direct infusion mass spectrometry metabolomics dataset: a benchmark for data processing and quality control

(2014) Jennifer A Kirwan et al.   Scientific Data

Workflows for Heliophysics

(2013) Anja Le Blanc et al.   Journal of Grid Computing

The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud

(2013) Katherine Wolstencroft et al.   NUCLEIC ACIDS RESEARCH

Comparative genomics in ecological physiology: toward a more nuanced understanding of acclimation and adaptation

(2012) A. Whitehead   JOURNAL OF EXPERIMENTAL BIOLOGY

MetaboLights—an open-access general-purpose repository for metabolomics studies and associated meta-data

(2012) Kenneth Haug et al.   NUCLEIC ACIDS RESEARCH

Characterization of Isotopic Abundance Measurements in High Resolution FT-ICR and Orbitrap Mass Spectra for Improved Confidence of Metabolite Identification

(2011) Ralf J. M. Weber et al.   ANALYTICAL CHEMISTRY

Algorithms and tools for the preprocessing of LC–MS metabolomics data

(2011) Sandra Castillo et al.   CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS

Missing values in mass spectrometry based metabolomics: an undervalued step in the data processing pipeline

(2011) Olga Hrydziuszko et al.   Metabolomics

Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry

(2011) Warwick B Dunn et al.   Nature Protocols

Ergatis: a web interface and scalable software system for bioinformatics workflows

(2010) J. Orvis et al.   BIOINFORMATICS

MI-Pack: Increased confidence of metabolite identification in mass spectra by integrating accurate masses and metabolic pathways

(2010) Ralf J.M. Weber et al.   CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

A signal filtering method for improved quantification and noise discrimination in fourier transform ion cyclotron resonance mass spectrometry-based metabolomics data

(2009) Tristan G. Payne et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Environmental metabolomics: a critical review and future perspectives

(2009) Jacob G. Bundy et al.   Metabolomics