Numerical Characterization of Protein Sequences Based on the Generalized Chou’s Pseudo Amino Acid Composition

iPTM-mLys: identifying multiple lysine PTM sites and their different types

(2016) Wang-Ren Qiu et al.   BIOINFORMATICS

pSumo-CD: predicting sumoylation sites in proteins with covariance discriminant algorithm by incorporating sequence-coupled effects into general PseAAC

(2016) Jianhua Jia et al.   BIOINFORMATICS

Intercorrelation of Major DNA/RNA Sequence Descriptors - A Preliminary Study

(2016) Dwaipayan Sen et al.   Current Computer-Aided Drug Design

Using deformation energy to analyze nucleosome positioning in genomes

(2016) Wei Chen et al.   GENOMICS

iNuc-STNC: a sequence-based predictor for identification of nucleosome positioning in genomes by extending the concept of SAAC and Chou's PseAAC

(2016) Muhammad Tahir et al.   Molecular BioSystems

iPhos-PseEn: Identifying phosphorylation sites in proteins by fusing different pseudo components into an ensemble classifier

(2016) Wang-Ren Qiu et al.   Oncotarget

iHyd-PseCp: Identify hydroxyproline and hydroxylysine in proteins by incorporating sequence-coupled effects into general PseAAC

(2016) Wang-Ren Qiu et al.   Oncotarget

iACP: a sequence-based tool for identifying anticancer peptides

(2016) Wei Chen et al.   Oncotarget

iROS-gPseKNC: Predicting replication origin sites in DNA by incorporating dinucleotide position-specific propensity into general pseudo nucleotide composition

(2016) Xuan Xiao et al.   Oncotarget

iCar-PseCp: identify carbonylation sites in proteins by Monte Carlo sampling and incorporating sequence coupled effects into general PseAAC

(2016) Jianhua Jia et al.   Oncotarget

Novel Graphical Representation and Numerical Characterization of DNA Sequences

(2016) Chun Li et al.   Applied Sciences-Basel

iEnhancer-2L: a two-layer predictor for identifying enhancers and their strength by pseudok-tuple nucleotide composition

(2015) Bin Liu et al.   BIOINFORMATICS

A protein mapping method based on physicochemical properties and dimension reduction

(2015) Zhao-Hui Qi et al.   COMPUTERS IN BIOLOGY AND MEDICINE

Impacts of Bioinformatics to Medicinal Chemistry

(2015) Kuo-Chen Chou   Medicinal Chemistry

Pseudo nucleotide composition or PseKNC: an effective formulation for analyzing genomic sequences

(2015) Wei Chen et al.   Molecular BioSystems

iRSpot-GAEnsC: identifing recombination spots via ensemble classifier and extending the concept of Chou’s PseAAC to formulate DNA samples

(2015) Muhammad Kabir et al.   MOLECULAR GENETICS AND GENOMICS

Pse-in-One: a web server for generating various modes of pseudo components of DNA, RNA, and protein sequences

(2015) Bin Liu et al.   NUCLEIC ACIDS RESEARCH

PseKNC: A flexible web server for generating pseudo K-tuple nucleotide composition

(2014) Wei Chen et al.   ANALYTICAL BIOCHEMISTRY

PseKNC-General: a cross-platform package for generating various modes of pseudo nucleotide compositions

(2014) Wei Chen et al.   BIOINFORMATICS

Sequence-based identification of recombination spots using pseudo nucleic acid representation and recursive feature extraction by linear kernel SVM

(2014) Liqi Li et al.   BMC BIOINFORMATICS

A Brief Review: The Z-curve Theory and its Application in Genome Analysis

(2014) Ren Zhang et al.   CURRENT GENOMICS

PseAAC-General: Fast Building Various Modes of General Form of Chou’s Pseudo-Amino Acid Composition for Large-Scale Protein Datasets

(2014) Pufeng Du et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

iRSpot-TNCPseAAC: Identify Recombination Spots with Trinucleotide Composition and Pseudo Amino Acid Components

(2014) Wang-Ren Qiu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

A novel descriptor of protein sequences and its application

(2014) Yuhua Yao et al.   JOURNAL OF THEORETICAL BIOLOGY

iPro54-PseKNC: a sequence-based predictor for identifying sigma-54 promoters in prokaryote with pseudo k-tuple nucleotide composition

(2014) Hao Lin et al.   NUCLEIC ACIDS RESEARCH

enDNA-Prot: Identification of DNA-Binding Proteins by Applying Ensemble Learning

(2014) Ruifeng Xu et al.   Biomed Research International

iAMP-2L: A two-level multi-label classifier for identifying antimicrobial peptides and their functional types

(2013) Xuan Xiao et al.   ANALYTICAL BIOCHEMISTRY

propy: a tool to generate various modes of Chou’s PseAAC

(2013) Dong-Sheng Cao et al.   BIOINFORMATICS

Milestones in graphical bioinformatics

(2013) Milan Randić et al.   INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY

iLoc-Animal: a multi-label learning classifier for predicting subcellular localization of animal proteins

(2013) Wei-Zhong Lin et al.   Molecular BioSystems

Some remarks on predicting multi-label attributes in molecular biosystems

(2013) Kuo-Chen Chou   Molecular BioSystems

iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition

(2013) Wei Chen et al.   NUCLEIC ACIDS RESEARCH

Phylogenetic analysis of DNA sequences based on -word and rough set theory

(2013) Chun Li et al.   PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS

DNA-Prot: Identification of DNA Binding Proteins from Protein Sequence Information using Random Forest

(2012) K. Krishna. Kumar et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

LIBSVM

(2012) Chih-Chung Chang et al.   ACM Transactions on Intelligent Systems and Technology

2-D graphical representation of protein sequences and its application to coronavirus phylogeny

(2011) Chun Li et al.   BMB Reports

iLoc-Plant: a multi-label classifier for predicting the subcellular localization of plant proteins with both single and multiple sites

(2011) Zhi-Cheng Wu et al.   Molecular BioSystems

iLoc-Hum: using the accumulation-label scale to predict subcellular locations of human proteins with both single and multiple sites

(2011) Kuo-Chen Chou et al.   Molecular BioSystems

iLoc-Euk: A Multi-Label Classifier for Predicting the Subcellular Localization of Singleplex and Multiplex Eukaryotic Proteins

(2011) Kuo-Chen Chou et al.   PLoS One

Graphical Representation of Proteins†

(2010) Milan Randić et al.   CHEMICAL REVIEWS

Pseudo Amino Acid Composition and its Applications in Bioinformatics, Proteomics and System Biology

(2009) Kuo-Chen Chou   Current Proteomics

Modern tools for identification of nucleic acid-binding proteins

(2008) Nadia Hégarat et al.   BIOCHIMIE

Similarity Analysis of Protein Sequences Based on the Normalized Relative-Entropy

(2008) Chun Li et al.   COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING

Representation of proteins as walks in 20-D space

(2008) M. Novič et al.   SAR AND QSAR IN ENVIRONMENTAL RESEARCH