H2-saturation of high affinity H2-oxidizing bacteria alters the ecological niche of soil microorganisms unevenly among taxonomic groups

Genomic and metagenomic surveys of hydrogenase distribution indicate H2 is a widely utilised energy source for microbial growth and survival

(2015) Chris Greening et al.   ISME Journal

Soil carbon content and relative abundance of high affinity H2-oxidizing bacteria predict atmospheric H2 soil uptake activity better than soil microbial community composition

(2015) Mondher Khdhiri et al.   SOIL BIOLOGY & BIOCHEMISTRY

Primer and platform effects on 16S rRNA tag sequencing

(2015) Julien Tremblay et al.   Frontiers in Microbiology

Breathing air to save energy - new insights into the ecophysiological role of high-affinity [NiFe]-hydrogenase in Streptomyces avermitilis

(2015) Quentin Liot et al.   MicrobiologyOpen

Atmospheric Hydrogen Scavenging: from Enzymes to Ecosystems

(2014) Chris Greening et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Distinct soil microbial diversity under long-term organic and conventional farming

(2014) Martin Hartmann et al.   ISME Journal

The Growth and Survival of Mycobacterium smegmatis Is Enhanced by Co-Metabolism of Atmospheric H2

(2014) Chris Greening et al.   PLoS One

A soil actinobacterium scavenges atmospheric H2 using two membrane-associated, oxygen-dependent [NiFe] hydrogenases

(2014) C. Greening et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Novel, Oxygen-Insensitive Group 5 [NiFe]-Hydrogenase in Ralstonia eutropha

(2013) Caspar Schäfer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Three different [NiFe] hydrogenases confer metabolic flexibility in the obligate aerobeMycobacterium smegmatis

(2013) Michael Berney et al.   ENVIRONMENTAL MICROBIOLOGY

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Consumption of atmospheric hydrogen during the life cycle of soil-dwelling actinobacteria

(2013) Laura K. Meredith et al.   Environmental Microbiology Reports

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

Genome Data Mining and Soil Survey for the Novel Group 5 [NiFe]-Hydrogenase To Explore the Diversity and Ecological Importance of Presumptive High-Affinity H2-Oxidizing Bacteria

(2011) Philippe Constant et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Co-localization of atmospheric H2 oxidation activity and high affinity H2-oxidizing bacteria in non-axenic soil and sterile soil amended with Streptomyces sp. PCB7

(2011) Philippe Constant et al.   SOIL BIOLOGY & BIOCHEMISTRY

Phylogenetic Molecular Ecological Network of Soil Microbial Communities in Response to Elevated CO2

(2011) J. Zhou et al.   mBio

Detection of a Reproducible, Single-Member Shift in Soil Bacterial Communities Exposed to Low Levels of Hydrogen

(2010) C. A. Osborne et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Unique Flexibility in Energy Metabolism Allows Mycobacteria to Combat Starvation and Hypoxia

(2010) Michael Berney et al.   PLoS One

Climbing Nitrogenase: Toward a Mechanism of Enzymatic Nitrogen Fixation

(2009) Brian M. Hoffman et al.   ACCOUNTS OF CHEMICAL RESEARCH

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Streptomycetes contributing to atmospheric molecular hydrogen soil uptake are widespread and encode a putative high-affinity [NiFe]-hydrogenase

(2009) Philippe Constant et al.   ENVIRONMENTAL MICROBIOLOGY

Effect of hydrogen on soil bacterial community structure in two soils as determined by terminal restriction fragment length polymorphism

(2009) Ye Zhang et al.   PLANT AND SOIL

Tropospheric H2 budget and the response of its soil uptake under the changing environment

(2009) Philippe Constant et al.   SCIENCE OF THE TOTAL ENVIRONMENT

The tropospheric cycle of H2: a critical review

(2009) D. H. Ehhalt et al.   TELLUS SERIES B-CHEMICAL AND PHYSICAL METEOROLOGY

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Isolation of Streptomyces sp. PCB7, the first microorganism demonstrating high-affinity uptake of tropospheric H2

(2008) Philippe Constant et al.   ISME Journal

Testing of null hypotheses in exploratory community analyses: similarity profiles and biota-environment linkage

(2008) K. Robert Clarke et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY