PhySortR: a fast, flexible tool for sorting phylogenetic trees in R

Genome of the red alga Porphyridium purpureum

(2013) Debashish Bhattacharya et al.   Nature Communications

Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs

(2012) Bruce A. Curtis et al.   NATURE

Cyanophora paradoxa Genome Elucidates Origin of Photosynthesis in Algae and Plants

(2012) D. C. Price et al.   SCIENCE

Experimental design and statistical rigor in phylogenomics of horizontal and endosymbiotic gene transfer

(2011) John W Stiller   BMC EVOLUTIONARY BIOLOGY

Red and Green Algal Monophyly and Extensive Gene Sharing Found in a Rich Repertoire of Red Algal Genes

(2011) Cheong Xin Chan et al.   CURRENT BIOLOGY

Red and Green Algal Origin of Diatom Membrane Transporters: Insights into Environmental Adaptation and Cell Evolution

(2011) Cheong Xin Chan et al.   PLoS One

phytools: an R package for phylogenetic comparative biology (and other things)

(2011) Liam J. Revell   Methods in Ecology and Evolution

Phylogenomics with incomplete taxon coverage: the limits to inference

(2010) Michael J Sanderson et al.   BMC EVOLUTIONARY BIOLOGY

Extended Newick: it is time for a standard representation of phylogenetic networks

(2009) Gabriel Cardona et al.   BMC BIOINFORMATICS

PhyloSort: a user-friendly phylogenetic sorting tool and its application to estimating the cyanobacterial contribution to the nuclear genome of Chlamydomonas

(2008) Ahmed Moustafa et al.   BMC EVOLUTIONARY BIOLOGY

The Phaeodactylum genome reveals the evolutionary history of diatom genomes

(2008) Chris Bowler et al.   NATURE

The origin of plastids

(2008) C.J Howe et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES