Molecular Docking and Molecular Dynamics Simulation Studies to Predict Flavonoid Binding on the Surface of DENV2 E Protein

Phytochemicals Perturb Membranes and Promiscuously Alter Protein Function

(2014) Helgi I. Ingólfsson et al.   ACS Chemical Biology

Computational design of a sulfoglucuronide derivative fitting into a hydrophobic pocket of dengue virus E protein

(2014) Tomoko Abe et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Ten years of dengue drug discovery: Progress and prospects

(2013) Siew Pheng Lim et al.   ANTIVIRAL RESEARCH

GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit

(2013) Sander Pronk et al.   BIOINFORMATICS

Structure and dynamics of the monomer of protein E of dengue virus type 2 with unprotonated histidine residues

(2013) L. Degrève et al.   GENETICS AND MOLECULAR RESEARCH

The global distribution and burden of dengue

(2013) Samir Bhatt et al.   NATURE

Atomic-level functional model of dengue virus Envelope protein infectivity

(2013) E. A. Christian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential antiviral and anti-inflammatory mechanisms of the flavonoids biochanin A and baicalein in H5N1 influenza A virus-infected cells

(2012) Patchima Sithisarn et al.   ANTIVIRAL RESEARCH

A Plant-Derived Flavonoid Inhibits Entry of All HCV Genotypes Into Human Hepatocytes

(2012) Sibylle Haid et al.   GASTROENTEROLOGY

The entry inhibitor Myrcludex-B efficiently blocks intrahepatic virus spreading in humanized mice previously infected with hepatitis B virus

(2012) Tassilo Volz et al.   JOURNAL OF HEPATOLOGY

New pockets in dengue virus 2 surface identified by molecular dynamics simulation

(2012) Carlos A. Fuzo et al.   JOURNAL OF MOLECULAR MODELING

Structure of a Dengue Virus Envelope Protein Late-Stage Fusion Intermediate

(2012) D. E. Klein et al.   JOURNAL OF VIROLOGY

Flavone Enhances Dengue Virus Type-2 (NGC Strain) Infectivity and Replication in Vero Cells

(2012) Keivan Zandi et al.   MOLECULES

Cryo-EM structure of the mature dengue virus at 3.5-Å resolution

(2012) Xiaokang Zhang et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

(−)-Epigallocatechin-3-gallate is a new inhibitor of hepatitis C virus entry

(2011) Noémie Calland et al.   HEPATOLOGY

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Antiviral activity of four types of bioflavonoid against dengue virus type-2

(2011) Keivan Zandi et al.   Virology Journal

Dengue virus life cycle: viral and host factors modulating infectivity

(2010) Izabela A. Rodenhuis-Zybert et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

A Small-Molecule Dengue Virus Entry Inhibitor

(2009) Q.-Y. Wang et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

A small molecule fusion inhibitor of dengue virus

(2009) Mee Kian Poh et al.   ANTIVIRAL RESEARCH

GROMOS96 43a1 performance on the characterization of glycoprotein conformational ensembles through molecular dynamics simulations

(2009) Laercio Pol-Fachin et al.   CARBOHYDRATE RESEARCH

Identification of novel target sites and an inhibitor of the dengue virus E protein

(2009) Ragothaman Yennamalli et al.   JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN

The dengue virus type 2 envelope protein fusion peptide is essential for membrane fusion

(2009) Claire Y.-H. Huang et al.   VIROLOGY

Biological characteristics of dengue virus and potential targets for drug design

(2008) Rui-feng Qi et al.   ACTA BIOCHIMICA ET BIOPHYSICA SINICA

GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

(2008) Berk Hess et al.   Journal of Chemical Theory and Computation

Functional entry of dengue virus into Aedes albopictus mosquito cells is dependent on clathrin-mediated endocytosis

(2008) E. G. Acosta et al.   JOURNAL OF GENERAL VIROLOGY

Neutralizing antibody and anti-retroviral drug sensitivities of HIV-1 isolates resistant to small molecule CCR5 inhibitors

(2008) Pavel Pugach et al.   VIROLOGY