Transcriptional Regulation of Tetrapyrrole Biosynthesis in Arabidopsis thaliana

Role of membrane glycerolipids in photosynthesis, thylakoid biogenesis and chloroplast development

(2016) Koichi Kobayashi   JOURNAL OF PLANT RESEARCH

Global transcriptome analyses provide evidence that chloroplast redox state contributes to intracellular as well as long-distance signalling in response to stress and acclimation in Arabidopsis

(2016) Rainer Bode et al.   PHOTOSYNTHESIS RESEARCH

Definition of a core module for the nuclear retrograde response to altered organellar gene expression identifies GLK overexpressors as gun mutants

(2016) Dario Leister et al.   PHYSIOLOGIA PLANTARUM

Nitric Oxide, Ethylene, and Auxin Cross Talk Mediates Greening and Plastid Development in Deetiolating Tomato Seedlings

(2016) Nielda K.G. Melo et al.   PLANT PHYSIOLOGY

LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development inArabidopsis thaliana

(2016) Quirin L. Ranftl et al.   PLANT PHYSIOLOGY

Posttranslational Control of ALA Synthesis Includes GluTR Degradation by Clp Protease and Stabilization by GluTR-Binding Protein

(2016) Janina Apitz et al.   PLANT PHYSIOLOGY

Cytokinin Regulates the Etioplast-Chloroplast Transition through the Two-Component Signaling System and Activation of Chloroplast-Related Genes

(2016) Anne Cortleven et al.   PLANT PHYSIOLOGY

Molecular convergence of clock and photosensory pathways through PIF3–TOC1 interaction and co-occupancy of target promoters

(2016) Judit Soy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Allocation of Heme Is Differentially Regulated by Ferrochelatase Isoforms in Arabidopsis Cells

(2016) Nino A. Espinas et al.   Frontiers in Plant Science

Regulation and function of tetrapyrrole biosynthesis in plants and algae

(2015) Pawel Brzezowski et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Porphyrin Binding to Gun4 Protein, Facilitated by a Flexible Loop, Controls Metabolite Flow through the Chlorophyll Biosynthetic Pathway

(2015) Jana Kopečná et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

REVEILLE1 promotes NADPH: protochlorophyllide oxidoreductase A expression and seedling greening in Arabidopsis

(2015) Gang Xu et al.   PHOTOSYNTHESIS RESEARCH

ATTED-II in 2016: A Plant Coexpression Database Towards Lineage-Specific Coexpression

(2015) Yuichi Aoki et al.   PLANT AND CELL PHYSIOLOGY

Ubiquitin facilitates a quality-control pathway that removes damaged chloroplasts

(2015) J. D. Woodson et al.   SCIENCE

Multifaceted roles of FHY3 and FAR1 in light signaling and beyond

(2015) Hai Wang et al.   TRENDS IN PLANT SCIENCE

CUL4 forms an E3 ligase with COP1 and SPA to promote light-induced degradation of PIF1

(2015) Ling Zhu et al.   Nature Communications

B-GATA transcription factors – insights into their structure, regulation, and role in plant development

(2015) Carina Behringer et al.   Frontiers in Plant Science

Molecular Phylogeny and Intricate Evolutionary History of the Three Isofunctional Enzymes Involved in the Oxidation of Protoporphyrinogen IX

(2014) Koichi Kobayashi et al.   Genome Biology and Evolution

Induced Deactivation of Genes Encoding Chlorophyll Biosynthesis Enzymes Disentangles Tetrapyrrole-Mediated Retrograde Signaling

(2014) Hagen Schlicke et al.   Molecular Plant

Singlet oxygen-mediated and EXECUTER-dependent signalling and acclimation of Arabidopsis thaliana exposed to light stress

(2014) S. Zhang et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

GluTR2 Complements a hema1 Mutant Lacking Glutamyl-tRNA Reductase 1, but is Differently Regulated at the Post-Translational Level

(2014) Janina Apitz et al.   PLANT AND CELL PHYSIOLOGY

Specific role of phosphatidylglycerol and functional overlaps with other thylakoid lipids in Arabidopsis chloroplast biogenesis

(2014) Koichi Kobayashi et al.   PLANT CELL REPORTS

Inducible Knockdown of MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE1 Reveals Roles of Galactolipids in Organelle Differentiation in Arabidopsis Cotyledons

(2014) S. Fujii et al.   PLANT PHYSIOLOGY

Light-regulated gene repositioning in Arabidopsis

(2014) Chun-Miao Feng et al.   Nature Communications

Arabidopsis miR171-Targeted Scarecrow-Like Proteins Bind to GT cis-Elements and Mediate Gibberellin-Regulated Chlorophyll Biosynthesis under Light Conditions

(2014) Zhaoxue Ma et al.   PLoS Genetics

The HY5-PIF Regulatory Module Coordinates Light and Temperature Control of Photosynthetic Gene Transcription

(2014) Gabriela Toledo-Ortiz et al.   PLoS Genetics

Transcriptional regulation of thylakoid galactolipid biosynthesis coordinated with chlorophyll biosynthesis during the development of chloroplasts in Arabidopsis

(2014) Koichi Kobayashi et al.   Frontiers in Plant Science

Intracellular Signaling from Plastid to Nucleus

(2013) Wei Chi et al.   Annual Review of Plant Biology

Functional Analysis of Light-harvesting-like Protein 3 (LIL3) and Its Light-harvesting Chlorophyll-binding Motif inArabidopsis

(2013) Kaori Takahashi et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Biogenesis and homeostasis of chloroplasts and other plastids

(2013) Paul Jarvis et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

PHYTOCHROME INTERACTING FACTOR3 Associates with the Histone Deacetylase HDA15 in Repression of Chlorophyll Biosynthesis and Photosynthesis in Etiolated Arabidopsis Seedlings

(2013) X. Liu et al.   PLANT CELL

Functional characterization of the two ferrochelatases inArabidopsis thaliana

(2013) MICHAEL SCHARFENBERG et al.   PLANT CELL AND ENVIRONMENT

Rice Cytokinin GATA Transcription Factor1 Regulates Chloroplast Development and Plant Architecture

(2013) D. Hudson et al.   PLANT PHYSIOLOGY

ABI4 and its role in chloroplast retrograde communication

(2013) Patricia León et al.   Frontiers in Plant Science

A model for tetrapyrrole synthesis as the primary mechanism for plastid-to-nucleus signaling during chloroplast biogenesis

(2013) Matthew J. Terry et al.   Frontiers in Plant Science

Conserved Chloroplast Open-reading Frameycf54Is Required for Activity of the Magnesium Protoporphyrin Monomethylester Oxidative Cyclase inSynechocystisPCC 6803

(2012) Sarah Hollingshead et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Transposase-Derived Proteins FHY3/FAR1 Interact with PHYTOCHROME-INTERACTING FACTOR1 to Regulate Chlorophyll Biosynthesis by Modulating HEMB1 during Deetiolation in Arabidopsis

(2012) W. Tang et al.   PLANT CELL

Regulation of Root Greening by Light and Auxin/Cytokinin Signaling in Arabidopsis

(2012) K. Kobayashi et al.   PLANT CELL

Role of galactolipid biosynthesis in coordinated development of photosynthetic complexes and thylakoid membranes during chloroplast biogenesis in Arabidopsis

(2012) Koichi Kobayashi et al.   PLANT JOURNAL

LCAA, a Novel Factor Required for Magnesium Protoporphyrin Monomethylester Cyclase Accumulation and Feedback Control of Aminolevulinic Acid Biosynthesis in Tobacco

(2012) C. A. Albus et al.   PLANT PHYSIOLOGY

Plastids Are Major Regulators of Light Signaling in Arabidopsis

(2012) M. E. Ruckle et al.   PLANT PHYSIOLOGY

Functional Characterization of the GATA Transcription Factors GNC and CGA1 Reveals Their Key Role in Chloroplast Development, Growth, and Division in Arabidopsis

(2012) Y.-H. Chiang et al.   PLANT PHYSIOLOGY

Evolution of GOLDEN2-LIKE gene function in C3 and C4 plants

(2012) Peng Wang et al.   PLANTA

Arabidopsis circadian clock protein, TOC1, is a DNA-binding transcription factor

(2012) J. M. Gendron et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Uniform ripening Encodes a Golden 2-like Transcription Factor Regulating Tomato Fruit Chloroplast Development

(2012) A. L. T. Powell et al.   SCIENCE

The photomorphogenic repressors COP1 and DET1: 20 years later

(2012) On Sun Lau et al.   TRENDS IN PLANT SCIENCE

Overexpression of HEMA1 encoding glutamyl-tRNA reductase

(2011) Judith Schmied et al.   JOURNAL OF PLANT PHYSIOLOGY

Interplay between HEAT SHOCK PROTEIN 90 and HY5 Controls PhANG Expression in Response to the GUN5 Plastid Signal

(2011) Peter Kindgren et al.   Molecular Plant

Coordinated transcriptional regulation underlying the circadian clock in Arabidopsis

(2011) Gang Li et al.   NATURE CELL BIOLOGY

DELLAs Regulate Chlorophyll and Carotenoid Biosynthesis to Prevent Photooxidative Damage during Seedling Deetiolation inArabidopsis

(2011) Soizic Cheminant et al.   PLANT CELL

Genome-Wide Binding Site Analysis of FAR-RED ELONGATED HYPOCOTYL3 Reveals Its Novel Function in Arabidopsis Development

(2011) X. Ouyang et al.   PLANT CELL

GUN4-Porphyrin Complexes Bind the ChlH/GUN5 Subunit of Mg-Chelatase and Promote Chlorophyll Biosynthesis inArabidopsis

(2011) Neil D. Adhikari et al.   PLANT CELL

An Arabidopsis GluTR Binding Protein Mediates Spatial Separation of 5-Aminolevulinic Acid Synthesis in Chloroplasts

(2011) O. Czarnecki et al.   PLANT CELL

The Transcription Factor ABI4 Is Required for the Ascorbic Acid–Dependent Regulation of Growth and Regulation of Jasmonate-Dependent Defense Signaling Pathways inArabidopsis

(2011) Pavel I. Kerchev et al.   PLANT CELL

Direct targets of the transcription factors ABA-Insensitive(ABI)4 and ABI5 reveal synergistic action by ABI4 and several bZIP ABA response factors

(2011) Wendy M. Reeves et al.   PLANT MOLECULAR BIOLOGY

Deficiency in riboflavin biosynthesis affects tetrapyrrole biosynthesis in etiolated Arabidopsis tissue

(2011) Boris Hedtke et al.   PLANT MOLECULAR BIOLOGY

GNC and CGA1 Modulate Chlorophyll Biosynthesis and Glutamate Synthase (GLU1/Fd-GOGAT) Expression in Arabidopsis

(2011) Darryl Hudson et al.   PLoS One

A chloroplast envelope-bound PHD transcription factor mediates chloroplast signals to the nucleus

(2011) Xuwu Sun et al.   Nature Communications

The GATA-type transcription factors GNC and GNL/CGA1 repress gibberellin signaling downstream from DELLA proteins and PHYTOCHROME-INTERACTING FACTORS

(2010) R. Richter et al.   GENES & DEVELOPMENT

MicroRNA171c-Targeted SCL6-II, SCL6-III, and SCL6-IV Genes Regulate Shoot Branching in Arabidopsis

(2010) Long Wang et al.   Molecular Plant

A small-molecule screen identifies new functions for the plant hormone strigolactone

(2010) Yuichiro Tsuchiya et al.   Nature Chemical Biology

Arabidopsis Transcription Factor ELONGATED HYPOCOTYL5 Plays a Role in the Feedback Regulation of Phytochrome A Signaling

(2010) J. Li et al.   PLANT CELL

LIL3, a light-harvesting-like protein, plays an essential role in chlorophyll and tocopherol biosynthesis

(2010) R. Tanaka et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PIFs: pivotal components in a cellular signaling hub

(2010) Pablo Leivar et al.   TRENDS IN PLANT SCIENCE

TOC1 functions as a molecular switch connecting the circadian clock with plant responses to drought

(2009) Tommaso Legnaioli et al.   EMBO JOURNAL

Plant oxylipins: role of jasmonic acid during programmed cell death, defence and leaf senescence

(2009) Christiane Reinbothe et al.   FEBS Journal

Ectopic Overexpression of The Transcription Factor OsGLK1 Induces Chloroplast Development in Non-Green Rice Cells

(2009) Hidemitsu Nakamura et al.   PLANT AND CELL PHYSIOLOGY

GLK Transcription Factors Coordinate Expression of the Photosynthetic Apparatus in Arabidopsis

(2009) M. T. Waters et al.   PLANT CELL

Definition of Early Transcriptional Circuitry Involved in Light-Induced Reversal of PIF-Imposed Repression of Photomorphogenesis in Young Arabidopsis Seedlings

(2009) P. Leivar et al.   PLANT CELL

Arabidopsis protochlorophyllide oxidoreductase A (PORA) restores bulk chlorophyll synthesis and normal development to a porB porC double mutant

(2009) Troy N. Paddock et al.   PLANT MOLECULAR BIOLOGY

CIRCADIAN CLOCK ASSOCIATED1 and LATE ELONGATED HYPOCOTYL Function Synergistically in the Circadian Clock of Arabidopsis

(2009) S. X. Lu et al.   PLANT PHYSIOLOGY

Coordination of Plastid Protein Import and Nuclear Gene Expression by Plastid-to-Nucleus Retrograde Signaling

(2009) T. Kakizaki et al.   PLANT PHYSIOLOGY

EIN3/EIL1 cooperate with PIF1 to prevent photo-oxidation and to promote greening ofArabidopsisseedlings

(2009) Shangwei Zhong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phytochromes promote seedling light responses by inhibiting four negatively-acting phytochrome-interacting factors

(2009) J. Shin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PIF3 is a repressor of chloroplast development

(2009) P. G. Stephenson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Singlet oxygen in plants: production, detoxification and signaling

(2009) Christian Triantaphylidès et al.   TRENDS IN PLANT SCIENCE

Decoding of Light Signals by Plant Phytochromes and Their Interacting Proteins

(2008) Gabyong Bae et al.   Annual Review of Plant Biology

The biochemistry of heme biosynthesis

(2008) Ilka U. Heinemann et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

A molecular framework for light and gibberellin control of cell elongation

(2008) Miguel de Lucas et al.   NATURE

Coordinated regulation of Arabidopsis thaliana development by light and gibberellins

(2008) Suhua Feng et al.   NATURE

Regulation and evolution of chlorophyll metabolism

(2008) Tatsuru Masuda et al.   PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES

Light signalling pathways regulating the Mg-chelatase branchpoint of chlorophyll synthesis during de-etiolation in Arabidopsis thaliana

(2008) Patrick G. Stephenson et al.   PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES

Functional analysis of Arabidopsis thaliana isoforms of the Mg-chelatase CHLI subunit

(2008) Koichi Kobayashi et al.   PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES

Role of Arabidopsis CHL27 Protein for Photosynthesis, Chloroplast Development and Gene Expression Profiling

(2008) Woo Young Bang et al.   PLANT AND CELL PHYSIOLOGY

Enzymatic, but not non-enzymatic,1O2-mediated peroxidation of polyunsaturated fatty acids forms part of the EXECUTER1-dependent stress response program in the flu mutant of Arabidopsis thaliana

(2008) Dominika Przybyla et al.   PLANT JOURNAL

Two GATA Transcription Factors Are Downstream Effectors of Floral Homeotic Gene Action in Arabidopsis

(2008) C. D. Mara et al.   PLANT PHYSIOLOGY

Tetrapyrrole profiling in Arabidopsis seedlings reveals that retrograde plastid nuclear signaling is not due to Mg-protoporphyrin IX accumulation

(2008) M. Moulin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The steady-state level of Mg-protoporphyrin IX is not a determinant of plastid-to-nucleus signaling in Arabidopsis

(2008) N. Mochizuki et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Clock Protein CCA1 and the bZIP Transcription Factor HY5 Physically Interact to Regulate Gene Expression in Arabidopsis

(2007) Christos Andronis et al.   Molecular Plant