Molecular Evidence for Metabolically Active Bacteria in the Atmosphere

Carbon Dioxide in the Free Troposphere and Boundary Layer at the Mt. Bachelor Observatory

(2016) Crystal D. McClure et al.   Aerosol and Air Quality Research

Spatio-temporal variability of airborne bacterial communities and their correlation with particulate matter chemical composition across two urban areas

(2015) I. Gandolfi et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Challenges and Opportunities of Airborne Metagenomics

(2015) H. Behzad et al.   Genome Biology and Evolution

Development of a dual-internal-reference technique to improve accuracy when determining bacterial 16S rRNA:16S rRNA gene ratio with application to Escherichia coli liquid and aerosol samples

(2015) Huajun Zhen et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Microbial rRNA:rDNA gene ratios may be unexpectedly low due to extracellular DNA preservation in soils

(2015) Glade Dlott et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Distinct summer and winter bacterial communities in the active layer of Svalbard permafrost revealed by DNA- and RNA-based analyses

(2015) Morten Schostag et al.   Frontiers in Microbiology

Resuscitation of the rare biosphere contributes to pulses of ecosystem activity

(2015) Zachary T. Aanderud et al.   Frontiers in Microbiology

Rare but active taxa contribute to community dynamics of benthic biofilms in glacier-fed streams

(2014) Linda Wilhelm et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial and archaeal communities in long-term contaminated surface and subsurface soil evaluated through coextracted RNA and DNA

(2014) Anu Mikkonen et al.   FEMS MICROBIOLOGY ECOLOGY

Drivers shaping the diversity and biogeography of total and active bacterial communities in the South China Sea

(2014) Yao Zhang et al.   MOLECULAR ECOLOGY

Spatial Diversity of Bacterioplankton Communities in Surface Water of Northern South China Sea

(2014) Jialin Li et al.   PLoS One

Substrate-Dependent rRNA Production in an Airborne Bacterium

(2014) Valdis Krumins et al.   Environmental Science & Technology Letters

Seasonal Variability in Bacterial and Fungal Diversity of the Near-Surface Atmosphere

(2013) Robert M. Bowers et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses

(2013) Steven J Blazewicz et al.   ISME Journal

Responses of soil bacterial and fungal communities to extreme desiccation and rewetting

(2013) Romain L Barnard et al.   ISME Journal

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Spatial Variations in Microbial Community Composition in Surface Seawater from the Ultra-Oligotrophic Center to Rim of the South Pacific Gyre

(2013) Qi Yin et al.   PLoS One

Consistent Errors in First Strand cDNA Due to Random Hexamer Mispriming

(2013) Thomas P. van Gurp et al.   PLoS One

Microbiome of the upper troposphere: Species composition and prevalence, effects of tropical storms, and atmospheric implications

(2013) N. DeLeon-Rodriguez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structure of the rare archaeal biosphere and seasonal dynamics of active ecotypes in surface coastal waters

(2013) M. Hugoni et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Intercontinental Dispersal of Bacteria and Archaea by Transpacific Winds

(2012) David J. Smith et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Relationship between Abundance and Specific Activity of Bacterioplankton in Open Ocean Surface Waters

(2012) Dana E. Hunt et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Seasonal variability in airborne bacterial communities at a high-elevation site

(2012) Robert M. Bowers et al.   ATMOSPHERIC ENVIRONMENT

Bacterial diversity, community structure and potential growth rates along an estuarine salinity gradient

(2012) Barbara J Campbell et al.   ISME Journal

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Free Tropospheric Transport of Microorganisms from Asia to North America

(2012) David J. Smith et al.   MICROBIAL ECOLOGY

Microbial life in the phyllosphere

(2012) Julia A. Vorholt   NATURE REVIEWS MICROBIOLOGY

Potential impact of microbial activity on the oxidant capacity and organic carbon budget in clouds

(2012) M. Vaitilingom et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

(2012) Daniel McDonald et al.   GigaScience

RNA Dynamics in Aging Bacterial Spores

(2011) Einat Segev et al.   CELL

Exploring the composition and diversity of microbial communities at the Jan Mayen hydrothermal vent field using RNA and DNA

(2011) Anders Lanzén et al.   FEMS MICROBIOLOGY ECOLOGY

Analysis of bacterial core communities in the central Baltic by comparative RNA–DNA-based fingerprinting provides links to structure–function relationships

(2011) Ingrid Brettar et al.   ISME Journal

Active and total microbial communities in forest soil are largely different and highly stratified during decomposition

(2011) Petr Baldrian et al.   ISME Journal

Microbial seed banks: the ecological and evolutionary implications of dormancy

(2011) Jay T. Lennon et al.   NATURE REVIEWS MICROBIOLOGY

The Active Human Gut Microbiota Differs from the Total Microbiota

(2011) Francesc Peris-Bondia et al.   PLoS One

Activity of abundant and rare bacteria in a coastal ocean

(2011) B. J. Campbell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Ribosomal tag pyrosequencing of DNA and RNA from benthic coral reef microbiota: community spatial structure, rare members and nitrogen-cycling guilds

(2010) Eric Gaidos et al.   ENVIRONMENTAL MICROBIOLOGY

Activity profiles for marine sponge-associated bacteria obtained by 16S rRNA vs 16S rRNA gene comparisons

(2010) Janine Kamke et al.   ISME Journal

Spatial variability in airborne bacterial communities across land-use types and their relationship to the bacterial communities of potential source environments

(2010) Robert M Bowers et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Biodiversity and biogeography of the atmosphere

(2010) A. M. Womack et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Dormancy contributes to the maintenance of microbial diversity

(2010) S. E. Jones et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biogeography and habitat modelling of high-alpine bacteria

(2010) Andrew J. King et al.   Nature Communications

Microbial community genomics in eastern Mediterranean Sea surface waters

(2009) Roi Feingersch et al.   ISME Journal

Comparison of DNA- and RNA-based bacterial community structures in soil exposed to 2,4-dichlorophenol

(2009) L. Lillis et al.   JOURNAL OF APPLIED MICROBIOLOGY