Evolution of Variable Number Tandem Repeats and Its Relationship with Genomic Diversity in Salmonella Typhimurium

Multiple adaptive routes of Salmonella enterica Typhimurium to biocide and antibiotic exposure

(2016) Tânia Curiao et al.   BMC GENOMICS

Limitations of variable number of tandem repeat typing identified through whole genome sequencing of Mycobacterium avium subsp. paratuberculosis on a national and herd level

(2015) Christina Ahlstrom et al.   BMC GENOMICS

Genomic Variability of Serial Human Isolates of Salmonella enterica Serovar Typhimurium Associated with Prolonged Carriage

(2015) Sophie Octavia et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Delineating Community Outbreaks of Salmonella enterica Serovar Typhimurium by Use of Whole-Genome Sequencing: Insights into Genomic Variability within an Outbreak

(2015) Sophie Octavia et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Analysis of Salmonella enterica Serovar Typhimurium Variable-Number Tandem-Repeat Data for Public Health Investigation Based on Measured Mutation Rates and Whole-Genome Sequence Comparisons

(2014) K. Dimovski et al.   JOURNAL OF BACTERIOLOGY

Multiple-locus variable number of tandem repeats analysis of Salmonella enterica serotype paratyphi A from Yuxi and comparison with isolates from the Chinese Medical Culture Collection Center

(2014) YINGBO YAO et al.   Molecular Medicine Reports

MLVA as a Tool for Public Health Surveillance of Human Salmonella Typhimurium: Prospective Study in Belgium and Evaluation of MLVA Loci Stability

(2014) Véronique Wuyts et al.   PLoS One

Distribution of Gifsy-3 and of Variants of ST64B and Gifsy-1 Prophages amongst Salmonella enterica Serovar Typhimurium Isolates: Evidence that Combinations of Prophages Promote Clonality

(2014) Lester Hiley et al.   PLoS One

Identification of Novel Factors Involved in Modulating Motility of Salmonella enterica Serotype Typhimurium

(2014) Lydia M. Bogomolnaya et al.   PLoS One

Genomic diversity and adaptation of Salmonella enterica serovar Typhimurium from analysis of six genomes of different phage types

(2013) Stanley Pang et al.   BMC GENOMICS

Evidence of microevolution of Salmonella Typhimurium during a series of egg-associated outbreaks linked to a single chicken farm

(2013) Jane Hawkey et al.   BMC GENOMICS

Development and application of MLVA methods as a tool for inter-laboratory surveillance

(2013) C A Nadon et al.   Eurosurveillance

Optimized Multilocus Variable-Number Tandem-Repeat Analysis Assay and Its Complementarity with Pulsed-Field Gel Electrophoresis and Multilocus Sequence Typing for Listeria monocytogenes Clone Identification and Surveillance

(2013) V. Chenal-Francisque et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Comparison of Multilocus Variable-Number Tandem-Repeat Analysis and Whole-Genome Sequencing for Investigation of Clostridium difficile Transmission

(2013) D. W. Eyre et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Qualimap: evaluating next-generation sequencing alignment data

(2012) Fernando García-Alcalde et al.   BIOINFORMATICS

Improving resolution of public health surveillance for human Salmonella entericaserovar Typhimurium infection: 3 years of prospective multiple-locus variable-number tandem-repeat analysis (MLVA)

(2012) Vitali Sintchenko et al.   BMC INFECTIOUS DISEASES

Multi-locus variable number tandem repeat analysis of 7th pandemic Vibrio cholerae

(2012) Connie Lam et al.   BMC MICROBIOLOGY

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Intracontinental spread of human invasive Salmonella Typhimurium pathovariants in sub-Saharan Africa

(2012) Chinyere K Okoro et al.   NATURE GENETICS

A Model-Based Bayesian Estimation of the Rate of Evolution of VNTR Loci in Mycobacterium tuberculosis

(2012) R. Zachariah Aandahl et al.   PLoS Computational Biology

Empirical Evaluation Reveals Best Fit of a Logistic Mutation Model for Human Y-Chromosomal Microsatellites

(2011) Arne Jochens et al.   GENETICS

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

Multiple-Locus Variable-Number Tandem-Repeat Analysis of Salmonella enterica Serovar Typhi

(2009) S. Octavia et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Biosynthesis and IroC-dependent export of the siderophore salmochelin are essential for virulence of Salmonella enterica serovar Typhimurium

(2008) Marie-Laure V. Crouch et al.   MOLECULAR MICROBIOLOGY

The Escherichia coli RutR transcription factor binds at targets within genes as well as intergenic regions

(2008) Tomohiro Shimada et al.   NUCLEIC ACIDS RESEARCH