Transcriptional Regulation of Carbohydrate Utilization Pathways in the Bifidobacterium Genus

BifidobacteriumSpecies Bacteremia: Risk Factors in Adults and Infants: Table 1.

(2015) Emmanuelle Weber et al.   CLINICAL INFECTIOUS DISEASES

Recent developments in prebiotics to selectively impact beneficial microbes and promote intestinal health

(2015) Robert A. Rastall et al.   CURRENT OPINION IN BIOTECHNOLOGY

Towards a more comprehensive concept for prebiotics

(2015) Laure B. Bindels et al.   Nature Reviews Gastroenterology & Hepatology

Bifidobacteria exhibit social behavior through carbohydrate resource sharing in the gut

(2015) Christian Milani et al.   Scientific Reports

Glycan cross-feeding activities between bifidobacteria under in vitro conditions

(2015) Francesca Turroni et al.   Frontiers in Microbiology

Comparative Genomic Analysis of 45 Type Strains of the Genus Bifidobacterium: A Snapshot of Its Genetic Diversity and Evolution

(2015) Zhihong Sun et al.   PLoS One

Transcription of Two Adjacent Carbohydrate Utilization Gene Clusters in Bifidobacterium breve UCC2003 Is Controlled by LacI- and Repressor Open Reading Frame Kinase (ROK)-Type Regulators

(2014) Kerry Joan O'Connell et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genomic Encyclopedia of Type Strains of the Genus Bifidobacterium

(2014) Christian Milani et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Investigation of the Evolutionary Development of the Genus Bifidobacterium by Comparative Genomics

(2014) Gabriele Andrea Lugli et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bifidobacterium longum Bacteremia in Preterm Infants Receiving Probiotics

(2014) Claire Bertelli et al.   CLINICAL INFECTIOUS DISEASES

The International Scientific Association for Probiotics and Prebiotics consensus statement on the scope and appropriate use of the term probiotic

(2014) Colin Hill et al.   Nature Reviews Gastroenterology & Hepatology

GenBank

(2014) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

UniProt: a hub for protein information

(2014)   NUCLEIC ACIDS RESEARCH

Comparative genomics and evolution of regulons of the LacI-family transcription factors

(2014) Dmitry A. Ravcheev et al.   Frontiers in Microbiology

Unraveling the Leloir Pathway of Bifidobacterium bifidum: Significance of the Uridylyltransferases

(2013) Frederik De Bruyn et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genomic reconstruction of transcriptional regulatory networks in lactic acid bacteria

(2013) Dmitry A Ravcheev et al.   BMC GENOMICS

Polysaccharides utilization in human gut bacterium Bacteroides thetaiotaomicron: comparative genomics reconstruction of metabolic and regulatory networks

(2013) Dmitry A Ravcheev et al.   BMC GENOMICS

RegPrecise 3.0 – A resource for genome-scale exploration of transcriptional regulation in bacteria

(2013) Pavel S Novichkov et al.   BMC GENOMICS

Genomic Reconstruction of the Transcriptional Regulatory Network in Bacillus subtilis

(2013) S. A. Leyn et al.   JOURNAL OF BACTERIOLOGY

The TetR Family of Regulators

(2013) L. Cuthbertson et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

IMG 4 version of the integrated microbial genomes comparative analysis system

(2013) Victor M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

(2013) Ross Overbeek et al.   NUCLEIC ACIDS RESEARCH

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Transcriptional regulation of the carbohydrate utilization network in Thermotoga maritima

(2013) Dmitry A. Rodionov et al.   Frontiers in Microbiology

Immunology and probiotic impact of the newborn and young children intestinal microflora

(2011) Eugenia Bezirtzoglou et al.   ANAEROBE

Cellodextrin Utilization byBifidobacterium breveUCC2003

(2011) Karina Pokusaeva et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Carbohydrate metabolism in Bifidobacteria

(2011) Karina Pokusaeva et al.   Genes and Nutrition

Identification of an ATPase, MsmK, Which Energizes Multiple Carbohydrate ABC Transporters in Streptococcus pneumoniae

(2011) Carolyn Marion et al.   INFECTION AND IMMUNITY

Metabolic activities and probiotic potential of bifidobacteria

(2011) D.A. Russell et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Inference of the Transcriptional Regulatory Network in Staphylococcus aureus by Integration of Experimental and Genomics-Based Evidence

(2011) D. A. Ravcheev et al.   JOURNAL OF BACTERIOLOGY

Control of Proteobacterial Central Carbon Metabolism by the HexR Transcriptional Regulator

(2011) Semen A. Leyn et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Combined Transcriptome and Proteome Analysis of Bifidobacterium animalis subsp. lactis BB-12 Grown on Xylo-Oligosaccharides and a Model of Their Utilization

(2010) O. Gilad et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genomic encyclopedia of sugar utilization pathways in the Shewanella genus

(2010) Dmitry A Rodionov et al.   BMC GENOMICS

Genomics and ecological overview of the genus Bifidobacterium

(2010) Francesca Turroni et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Genomic Insights into Bifidobacteria

(2010) J.-H. Lee et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach

(2010) P. S. Novichkov et al.   NUCLEIC ACIDS RESEARCH

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Metabolism of a plant derived galactose-containing polysaccharide by Bifidobacterium breve UCC2003

(2010) Mary O'Connell Motherway et al.   Microbial Biotechnology

MicrobesOnline: an integrated portal for comparative and functional genomics

(2009) P. S. Dehal et al.   NUCLEIC ACIDS RESEARCH

Ribose utilization by the human commensalBifidobacterium breveUCC2003

(2009) Karina Pokusaeva et al.   Microbial Biotechnology