Associations between Ectomycorrhizal Fungi and Bacterial Needle Endophytes in Pinus radiata: Implications for Biotic Selection of Microbial Communities

The Hidden World within Plants: Ecological and Evolutionary Considerations for Defining Functioning of Microbial Endophytes

(2015) Pablo R. Hardoim et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Robust biological nitrogen fixation in a model grass-bacterial association

(2015) Vânia C. S. Pankievicz et al.   PLANT JOURNAL

Interchange of entire communities: microbial community coalescence

(2015) Matthias C. Rillig et al.   TRENDS IN ECOLOGY & EVOLUTION

Root-associated bacterial endophytes from Ralstonia solanacearum resistant and susceptible tomato cultivars and their pathogen antagonistic effects

(2015) Reshmi Upreti et al.   Frontiers in Microbiology

Bacterial endophyte communities in the foliage of coast redwood and giant sequoia

(2015) Alyssa A. Carrell et al.   Frontiers in Microbiology

Seasonal variation of bacterial endophytes in urban trees

(2015) Shu Yi Shen et al.   Frontiers in Microbiology

Branching out: Towards a trait-based understanding of fungal ecology

(2015) Carlos A. Aguilar-Trigueros et al.   Fungal Biology Reviews

Genetic variation in horizontally transmitted fungal endophytes of pine needles reveals population structure in cryptic species

(2014) Ryoko Oono et al.   AMERICAN JOURNAL OF BOTANY

Environmental drivers of ectomycorrhizal communities in Europe's temperate oak forests

(2014) Laura M. Suz et al.   MOLECULAR ECOLOGY

EctomycorrhizalCortinariusspecies participate in enzymatic oxidation of humus in northern forest ecosystems

(2014) Inga T. M. Bödeker et al.   NEW PHYTOLOGIST

Interaction with ectomycorrhizal fungi and endophytic Methylobacterium affects nutrient uptake and growth of pine seedlings in vitro

(2014) J. Pohjanen et al.   TREE PHYSIOLOGY

Trait-based approaches for understanding microbial biodiversity and ecosystem functioning

(2014) Sascha Krause et al.   Frontiers in Microbiology

The new species Enterobacter oryziphilus sp. nov. and Enterobacter oryzendophyticus sp. nov. are key inhabitants of the endosphere of rice

(2013) Pablo Hardoim et al.   BMC MICROBIOLOGY

Increased drought stress resilience of maize through endophytic colonization by Burkholderia phytofirmans PsJN and Enterobacter sp. FD17

(2013) Muhammad Naveed et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Ectomycorrhizal fungal traits reflect environmental conditions along a coastal California edaphic gradient

(2013) Holly V. Moeller et al.   FEMS MICROBIOLOGY ECOLOGY

Plant-soil feedbacks: the past, the present and future challenges

(2013) Wim H. van der Putten et al.   JOURNAL OF ECOLOGY

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Elevated CO2spurs reciprocal positive effects between a plant virus and an arbuscular mycorrhizal fungus

(2013) Megan A. Rúa et al.   NEW PHYTOLOGIST

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Radiocarbon evidence for the mining of organic nitrogen from soil by mycorrhizal fungi

(2012) Erik A. Hobbie et al.   BIOGEOCHEMISTRY

Geographic divergence in a species-rich symbiosis: interactions between Monterey pines and ectomycorrhizal fungi

(2012) Jason D. Hoeksema et al.   ECOLOGY

Leaf microbiota in an agroecosystem: spatiotemporal variation in bacterial community composition on field-grown lettuce

(2012) Gurdeep Rastogi et al.   ISME Journal

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

Beyond biogeographic patterns: processes shaping the microbial landscape

(2012) China A. Hanson et al.   NATURE REVIEWS MICROBIOLOGY

A Drought Resistance-Promoting Microbiome Is Selected by Root System under Desert Farming

(2012) Ramona Marasco et al.   PLoS One

‘Ecosystomics’: ecology by sequencer

(2012) Anthony M. Poole et al.   TRENDS IN ECOLOGY & EVOLUTION

Belowground biodiversity effects of plant symbionts support aboveground productivity

(2011) Cameron Wagg et al.   ECOLOGY LETTERS

Do assembly history effects attenuate from species to ecosystem properties? A field test with wood-inhabiting fungi

(2011) Ian A. Dickie et al.   ECOLOGY LETTERS

Conservation of ectomycorrhizal fungi: exploring the linkages between functional and taxonomic responses to anthropogenic N deposition

(2011) E.A. Lilleskov et al.   Fungal Ecology

Asynchronous origins of ectomycorrhizal clades of Agaricales

(2011) M. Ryberg et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

The ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves

(2010) Amanda J. Redford et al.   ENVIRONMENTAL MICROBIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Improving indicator species analysis by combining groups of sites

(2010) Miquel De Cáceres et al.   OIKOS

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Associations between species and groups of sites: indices and statistical inference

(2009) Miquel De Cáceres et al.   ECOLOGY

A multitrophic perspective on functioning and evolution of facilitation in plant communities

(2009) Wim H. van der Putten   JOURNAL OF ECOLOGY

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ectomycorrhizal lifestyle in fungi: global diversity, distribution, and evolution of phylogenetic lineages

(2009) Leho Tedersoo et al.   MYCORRHIZA

Nitrogen isotopes in ectomycorrhizal sporocarps correspond to belowground exploration types

(2009) Erik A. Hobbie et al.   PLANT AND SOIL

Fungal Community Ecology: A Hybrid Beast with a Molecular Master

(2008) Kabir G. Peay et al.   BIOSCIENCE

The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems

(2008) Marcel G. A. van der Heijden et al.   ECOLOGY LETTERS

Complete Genome Sequence of the N2-Fixing Broad Host Range Endophyte Klebsiella pneumoniae 342 and Virulence Predictions Verified in Mice

(2008) Derrick E. Fouts et al.   PLoS Genetics