Comparative Analysis of Two Helicobacter pylori Strains using Genomics and Mass Spectrometry-Based Proteomics

Identification of a Latin American-specific BabA adhesin variant through whole genome sequencing of Helicobacter pylori patient isolates from Nicaragua

(2016) Kaisa Thorell et al.   BMC EVOLUTIONARY BIOLOGY

Helicobacter pylori in gastric carcinogenesis

(2015) Hyo Jun Ahn et al.   World Journal of Gastrointestinal Oncology

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Analysis of Surface-Exposed Outer Membrane Proteins in Helicobacter pylori

(2014) B. J. Voss et al.   JOURNAL OF BACTERIOLOGY

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(2014) Ombretta Repetto et al.   MOLECULAR MEDICINE

Transcriptome signatures in Helicobacter pylori-infected mucosa identifies acidic mammalian chitinase loss as a corpus atrophy marker

(2013) Intawat Nookaew et al.   BMC Medical Genomics

Mass Spectrometry-based Quantitative Proteomic Profiling of Human Pancreatic and Hepatic Stellate Cell Lines

(2013) Joao A. Paulo et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Genome-Wide Survey of Mutual Homologous Recombination in a Highly Sexual Bacterial Species

(2012) Koji Yahara et al.   Genome Biology and Evolution

Strain-Level Typing and Identification of Bacteria Using Mass Spectrometry-Based Proteomics

(2012) Roger Karlsson et al.   JOURNAL OF PROTEOME RESEARCH

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

(2011) Nabil-Fareed Alikhan et al.   BMC GENOMICS

Global quantification of mammalian gene expression control

(2011) Björn Schwanhäusser et al.   NATURE

Current methodologies for proteomics of bacterial surface-exposed and cell envelope proteins

(2011) Nestor Solis et al.   PROTEOMICS

PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes

(2010) Nancy Y. Yu et al.   BIOINFORMATICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Elucidation of the outer membrane proteome of Salmonella enterica serovar Typhimurium utilising a lipid-based protein immobilization technique

(2010) Darren Chooneea et al.   BMC MICROBIOLOGY

Identification ofYersinia pestisandEscherichia coliStrains by Whole Cell and Outer Membrane Protein Extracts with Mass Spectrometry-Based Proteomics

(2010) Rabih E. Jabbour et al.   JOURNAL OF PROTEOME RESEARCH

Strain-specific genes of Helicobacter pylori: genome evolution driven by a novel type IV secretion system and genomic island transfer

(2010) Wolfgang Fischer et al.   NUCLEIC ACIDS RESEARCH

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

Presence of High Numbers of Transcriptionally ActiveHelicobacter pyloriin Vomitus from Bangladeshi Patients Suffering from Acute Gastroenteritis

(2009) Anders Janzon et al.   HELICOBACTER

Functional Divergence ofHelicobacter pyloriRelated to Early Gastric Cancer

(2009) Kuvat T. Momynaliev et al.   JOURNAL OF PROTEOME RESEARCH

Significance Analysis of Spectral Count Data in Label-free Shotgun Proteomics

(2008) Hyungwon Choi et al.   MOLECULAR & CELLULAR PROTEOMICS

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY