Origins of the 2009 H1N1 influenza pandemic in swine in Mexico

Pandemic influenza - including a risk assessment of H5N1

(2016) J.K. TAUBENBERGER et al.   REVUE SCIENTIFIQUE ET TECHNIQUE-OFFICE INTERNATIONAL DES EPIZOOTIES

Transmission dynamics of pandemic influenza A(H1N1)pdm09 virus in humans and swine in backyard farms in Tumbes, Peru

(2015) Yeny O. Tinoco et al.   Influenza and Other Respiratory Viruses

Infectious Diseases Society of America and Gain-of-Function Experiments With Pathogens Having Pandemic Potential

(2015) Gregory M. Frank et al.   JOURNAL OF INFECTIOUS DISEASES

Continual Reintroduction of Human Pandemic H1N1 Influenza A Viruses into Swine in the United States, 2009 to 2014

(2015) Martha I. Nelson et al.   JOURNAL OF VIROLOGY

Molecular Epidemiology and Evolution of Influenza Viruses Circulating within European Swine between 2009 and 2013

(2015) Simon J. Watson et al.   JOURNAL OF VIROLOGY

Dissemination, divergence and establishment of H7N9 influenza viruses in China

(2015) Tommy Tsan-Yuk Lam et al.   NATURE

Prevalence, genetics, and transmissibility in ferrets of Eurasian avian-like H1N1 swine influenza viruses

(2015) Huanliang Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reverse zoonosis of influenza to swine: new perspectives on the human–animal interface

(2015) Martha I. Nelson et al.   TRENDS IN MICROBIOLOGY

Global migration of influenza A viruses in swine

(2015) Martha I. Nelson et al.   Nature Communications

Introductions and Evolution of Human-Origin Seasonal Influenza A Viruses in Multinational Swine Populations

(2014) M. I. Nelson et al.   JOURNAL OF VIROLOGY

Expansion of Genotypic Diversity and Establishment of 2009 H1N1 Pandemic-Origin Internal Genes in Pigs in China

(2014) H. Liang et al.   JOURNAL OF VIROLOGY

Demonstrating the Use of High-Volume Electronic Medical Claims Data to Monitor Local and Regional Influenza Activity in the US

(2014) Cécile Viboud et al.   PLoS One

North American Triple Reassortant and Eurasian H1N1 Swine Influenza Viruses Do Not Readily Reassort to Generate a 2009 Pandemic H1N1-Like Virus

(2014) W. Ma et al.   mBio

Unifying Viral Genetics and Human Transportation Data to Predict the Global Transmission Dynamics of Human Influenza H3N2

(2014) Philippe Lemey et al.   PLoS Pathogens

Population dynamics of cocirculating swine influenza A viruses in the United States from 2009 to 2012

(2013) Tavis K. Anderson et al.   Influenza and Other Respiratory Viruses

The Hidden Geometry of Complex, Network-Driven Contagion Phenomena

(2013) D. Brockmann et al.   SCIENCE

Genesis and genetic constellations of swine influenza viruses in Thailand

(2013) Sukontip Poonsuk et al.   VETERINARY MICROBIOLOGY

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Airborne Transmission of Influenza A/H5N1 Virus Between Ferrets

(2012) S. Herfst et al.   SCIENCE

Molecular evidence for interspecies transmission of H3N2pM/H3N2v influenza A viruses at an Ohio agricultural fair, July 2012

(2012) Andrew S Bowman et al.   Emerging Microbes & Infections

Isolation of novel triple-reassortant swine H3N2 influenza viruses possessing the hemagglutinin and neuraminidase genes of a seasonal influenza virus in Vietnam in 2010

(2011) Long Thanh Ngo et al.   Influenza and Other Respiratory Viruses

Evidence of reassortment of pandemic H1N1 influenza virus in swine in Argentina: are we facing the expansion of potential epicenters of influenza emergence?

(2011) Ariel Pereda et al.   Influenza and Other Respiratory Viruses

Outbreak of swine influenza in Argentina reveals a non-contemporary human H3N2 virus highly transmissible among pigs

(2011) J. A. Cappuccio et al.   JOURNAL OF GENERAL VIROLOGY

Reassortment Events among Swine Influenza A Viruses in China: Implications for the Origin of the 2009 Influenza Pandemic

(2011) T. T.-Y. Lam et al.   JOURNAL OF VIROLOGY

Long-term evolution and transmission dynamics of swine influenza A virus

(2011) Dhanasekaran Vijaykrishna et al.   NATURE

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Hemagglutinin-neuraminidase balance confers respiratory-droplet transmissibility of the pandemic H1N1 influenza virus in ferrets

(2011) H.-L. Yen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterizing the Epidemiology of the 2009 Influenza A/H1N1 Pandemic in Mexico

(2011) Gerardo Chowell et al.   PLOS MEDICINE

Eurasian-Origin Gene Segments Contribute to the Transmissibility, Aerosol Release, and Morphology of the 2009 Pandemic H1N1 Influenza Virus

(2011) Seema S. Lakdawala et al.   PLoS Pathogens

Spatial Dynamics of Human-Origin H1 Influenza A Virus in North American Swine

(2011) Martha I. Nelson et al.   PLoS Pathogens

Many-core algorithms for statistical phylogenetics

(2009) M. A. Suchard et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic

(2009) Gavin J. D. Smith et al.   NATURE

Minimal molecular constraints for respiratory droplet transmission of an avian-human H9N2 influenza A virus

(2009) E. M. Sorrell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Antigenic and Genetic Characteristics of Swine-Origin 2009 A(H1N1) Influenza Viruses Circulating in Humans

(2009) R. J. Garten et al.   SCIENCE

Genetic diversity of swine influenza viruses isolated from pigs during 2000 to 2005 in Thailand

(2008) Nobuhiro Takemae et al.   Influenza and Other Respiratory Viruses

Fast, accurate and simulation-free stochastic mapping

(2008) V. N Minin et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Global Circulation of Seasonal Influenza A (H3N2) Viruses

(2008) C. A. Russell et al.   SCIENCE