Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan

The Developmental Control of Transposable Elements and the Evolution of Higher Species

(2015) Marc Friedli et al.   Annual Review of Cell and Developmental Biology

Shared Enhancer Activity in the Limbs and Phallus and Functional Divergence of a Limb-Genital cis-Regulatory Element in Snakes

(2015) Carlos R. Infante et al.   DEVELOPMENTAL CELL

Structure, function and evolution of topologically associating domains (TADs) atHOXloci

(2015) Nicolas Lonfat et al.   FEBS LETTERS

The significance of Hox gene collinearity

(2015) Stephen J. Gaunt   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

Evolution of the snake body form reveals homoplasy in amniote Hox gene function

(2015) Jason J. Head et al.   NATURE

Snakes: hatching of a model system for Evo-Devo?

(2015) Isabel Guerreiro et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

The genome sequence of the corn snake (Pantherophis guttatus), a valuable resource for EvoDevo studies in squamates

(2015) Asier Ullate-Agote et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

A relative shift in cloacal location repositions external genitalia in amniote evolution

(2014) Patrick Tschopp et al.   NATURE

deepTools: a flexible platform for exploring deep-sequencing data

(2014) Fidel Ramírez et al.   NUCLEIC ACIDS RESEARCH

HTSstation: A Web Application and Open-Access Libraries for High-Throughput Sequencing Data Analysis

(2014) Fabrice P. A. David et al.   PLoS One

Endogenous hepadnaviruses, bornaviruses and circoviruses in snakes

(2014) C. Gilbert et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Convergent evolution of complex regulatory landscapes and pleiotropy at Hox loci

(2014) N. Lonfat et al.   SCIENCE

Conservation and Divergence of Regulatory Strategies at Hox Loci and the Origin of Tetrapod Digits

(2014) Joost M. Woltering et al.   PLOS BIOLOGY

Evidence for at least six Hox clusters in the Japanese lamprey (Lethenteron japonicum)

(2013) T. K. Mehta et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Burmese python genome reveals the molecular basis for extreme adaptation in snakes

(2013) T. A. Castoe et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system

(2013) F. J. Vonk et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Switch Between Topological Domains Underlies HoxD Genes Collinearity in Mouse Limbs

(2013) G. Andrey et al.   SCIENCE

Multiple Enhancers Regulate Hoxd Genes and the Hotdog LncRNA during Cecum Budding

(2013) Saskia Delpretti et al.   Cell Reports

Clustering of Tissue-Specific Sub-TADs Accompanies the Regulation of HoxA Genes in Developing Limbs

(2013) Soizik Berlivet et al.   PLoS Genetics

Bimodal control of Hoxd gene transcription in the spinal cord defines two regulatory subclusters

(2012) P. Tschopp et al.   DEVELOPMENT

A function for all posterior Hoxd genes during digit development?

(2012) Saskia Delpretti et al.   DEVELOPMENTAL DYNAMICS

3C-based technologies to study the shape of the genome

(2012) Wouter de Laat et al.   METHODS

Topological domains in mammalian genomes identified by analysis of chromatin interactions

(2012) Jesse R. Dixon et al.   NATURE

Spatial partitioning of the regulatory landscape of the X-inactivation centre

(2012) Elphège P. Nora et al.   NATURE

A Regulatory Archipelago Controls Hox Genes Transcription in Digits

(2011) Thomas Montavon et al.   CELL

Development of the external genitalia: Conserved and divergent mechanisms of appendage patterning

(2011) Martin J. Cohn   DEVELOPMENTAL DYNAMICS

The Polycomb complex PRC2 and its mark in life

(2011) Raphaël Margueron et al.   NATURE

The Dynamic Architecture of Hox Gene Clusters

(2011) D. Noordermeer et al.   SCIENCE

A regulatory ‘landscape effect’ over the HoxD cluster

(2010) Patrick Tschopp et al.   DEVELOPMENTAL BIOLOGY

Changes in Hox genes’ structure and function during the evolution of the squamate body plan

(2010) Nicolas Di-Poï et al.   NATURE

Axial patterning in snakes and caecilians: Evidence for an alternative interpretation of the Hox code

(2009) Joost M. Woltering et al.   DEVELOPMENTAL BIOLOGY

Atypical relaxation of structural constraints in Hox gene clusters of the green anole lizard

(2009) N. Di-Poi et al.   GENOME RESEARCH

Epigenetic Temporal Control of Mouse Hox Genes in Vivo

(2009) N. Soshnikova et al.   SCIENCE

Uncoupling Time and Space in the Collinear Regulation of Hox Genes

(2009) Patrick Tschopp et al.   PLoS Genetics

Evo-Devo: Variations on Ancestral Themes

(2008) E.M. De Robertis   CELL

Evo-Devo and an Expanding Evolutionary Synthesis: A Genetic Theory of Morphological Evolution

(2008) Sean B. Carroll   CELL

Control of segment number in vertebrate embryos

(2008) Céline Gomez et al.   NATURE

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY