A Mammalian enhancer trap resource for discovering and manipulating neuronal cell types

Optogenetic Mapping of Intracortical Circuits Originating from Semilunar Cells in the Piriform Cortex

(2015) Julian M.C. Choy et al.   CEREBRAL CORTEX

Synaptic Circuit Organization of Motor Corticothalamic Neurons

(2015) N. Yamawaki et al.   JOURNAL OF NEUROSCIENCE

Cell type–specific manipulation with GFP-dependent Cre recombinase

(2015) Jonathan C Y Tang et al.   NATURE NEUROSCIENCE

A Corticothalamic Switch: Controlling the Thalamus with Dynamic Synapses

(2015) Shane R. Crandall et al.   NEURON

Genomic Perspectives of Transcriptional Regulation in Forebrain Development

(2015) Alex S. Nord et al.   NEURON

Transgenic Mice for Intersectional Targeting of Neural Sensors and Effectors with High Specificity and Performance

(2015) Linda Madisen et al.   NEURON

Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq

(2015) A. Zeisel et al.   SCIENCE

piggyBac-ing models and new therapeutic strategies

(2015) Lauren E. Woodard et al.   TRENDS IN BIOTECHNOLOGY

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Layer 6 Corticothalamic Neurons Activate a Cortical Output Layer, Layer 5a

(2014) J. Kim et al.   JOURNAL OF NEUROSCIENCE

Translaminar Inhibitory Cells Recruited by Layer 6 Corticothalamic Neurons Suppress Visual Cortex

(2014) Dante S. Bortone et al.   NEURON

NMDAR-Regulated Dynamics of Layer 4 Neuronal Dendrites during Thalamocortical Reorganization in Neonates

(2014) Hidenobu Mizuno et al.   NEURON

Robustly detecting differential expression in RNA sequencing data using observation weights

(2014) Xiaobei Zhou et al.   NUCLEIC ACIDS RESEARCH

N2A: a computational tool for modeling from neurons to algorithms

(2014) Fredrick Rothganger et al.   Frontiers in Neural Circuits

Anatomical characterization of Cre driver mice for neural circuit mapping and manipulation

(2014) Julie A. Harris et al.   Frontiers in Neural Circuits

Simultaneous visualization of extrinsic and intrinsic axon collaterals in Golgi-like detail for mouse corticothalamic and corticocortical cells: a double viral infection method

(2014) Akiya Watakabe et al.   Frontiers in Neural Circuits

Genetic Approaches to Neural Circuits in the Mouse

(2013) Z. Josh Huang et al.   Annual Review of Neuroscience

A Nanobody-Based System Using Fluorescent Proteins as Scaffolds for Cell-Specific Gene Manipulation

(2013) Jonathan C.Y. Tang et al.   CELL

A High-Resolution Enhancer Atlas of the Developing Telencephalon

(2013) Axel Visel et al.   CELL

Rapid and Pervasive Changes in Genome-wide Enhancer Usage during Mammalian Development

(2013) Alex S. Nord et al.   CELL

Comparative anatomy of the prosubiculum, subiculum, presubiculum, postsubiculum, and parasubiculum in human, monkey, and rodent

(2013) Song-Lin Ding   JOURNAL OF COMPARATIVE NEUROLOGY

The piggyBac Transposon Displays Local and Distant Reintegration Preferences and Can Cause Mutations at Noncanonical Integration Sites

(2013) M. A. Li et al.   MOLECULAR AND CELLULAR BIOLOGY

Architecture of spatial circuits in the hippocampal region

(2013) M. P. Witter et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Functional anatomy of distant-acting mammalian enhancers

(2013) D. E. Dickel et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Convergence of pontine and proprioceptive streams onto multimodal cerebellar granule cells

(2013) Cheng-Chiu Huang et al.   eLife

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Thalamocortical interactions

(2012) S Murray Sherman   CURRENT OPINION IN NEUROBIOLOGY

Gain control by layer six in cortical circuits of vision

(2012) Shawn R. Olsen et al.   NATURE

Genetic Labeling of Neuronal Subsets through Enhancer Trapping in Mice

(2012) Wolfgang Kelsch et al.   PLoS One

Two Layers of Synaptic Processing by Principal Neurons in Piriform Cortex

(2011) N. Suzuki et al.   JOURNAL OF NEUROSCIENCE

Large-scale analysis of the regulatory architecture of the mouse genome with a transposon-associated sensor

(2011) Sandra Ruf et al.   NATURE GENETICS

A Resource of Cre Driver Lines for Genetic Targeting of GABAergic Neurons in Cerebral Cortex

(2011) Hiroki Taniguchi et al.   NEURON

A hyperactive piggyBac transposase for mammalian applications

(2011) K. Yusa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Widespread transcription at neuronal activity-regulated enhancers

(2010) Tae-Kyung Kim et al.   NATURE

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

PiggyBac Transposon Mutagenesis: A Tool for Cancer Gene Discovery in Mice

(2010) R. Rad et al.   SCIENCE

Neocortical layer 6, a review

(2010) Thomson   Frontiers in Neuroanatomy

VEZF1 Elements Mediate Protection from DNA Methylation

(2010) Jacqueline Dickson et al.   PLoS Genetics

Globally optimal stitching of tiled 3D microscopic image acquisitions

(2009) S. Preibisch et al.   BIOINFORMATICS

Chromosomal mobilization and reintegration ofSleeping BeautyandPiggyBactransposons

(2009) Qi Liang et al.   GENESIS

Genomic views of distant-acting enhancers

(2009) Axel Visel et al.   NATURE

Generation of transgene-free induced pluripotent mouse stem cells by the piggyBac transposon

(2009) Kosuke Yusa et al.   NATURE METHODS

A robust and high-throughput Cre reporting and characterization system for the whole mouse brain

(2009) Linda Madisen et al.   NATURE NEUROSCIENCE

Split-Cre Complementation Indicates Coincident Activity of Different Genes In Vivo

(2009) Johannes Hirrlinger et al.   PLoS One

Short promoters in viral vectors drive selective expression in mammalian inhibitory neurons, but do not restrict activity to specific inhibitory cell-types

(2009) Jason L. Nathanson   Frontiers in Neural Circuits

Region-Specific Spike-Frequency Acceleration in Layer 5 Pyramidal Neurons Mediated by Kv1 Subunits

(2008) M. N. Miller et al.   JOURNAL OF NEUROSCIENCE

Genetic Dissection of Neural Circuits

(2008) Liqun Luo et al.   NEURON

Efficient transposition of the Tol2 transposable element from a single-copy donor in zebrafish

(2008) A. Urasaki et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA