Genomic epidemiology of artemisinin resistant malaria

A molecular mechanism of artemisinin resistance in Plasmodium falciparum malaria

(2015) Alassane Mbengue et al.   NATURE

Genetic architecture of artemisinin-resistant Plasmodium falciparum

(2015) Olivo Miotto et al.   NATURE GENETICS

Targeting the Cell Stress Response of Plasmodium falciparum to Overcome Artemisinin Resistance

(2015) Con Dogovski et al.   PLOS BIOLOGY

Recent Selective Sweeps in North American Drosophila melanogaster Show Signatures of Soft Sweeps

(2015) Nandita R. Garud et al.   PLoS Genetics

Absence of Putative Artemisinin Resistance Mutations Among Plasmodium falciparum in Sub-Saharan Africa: A Molecular Epidemiologic Study

(2014) Steve M. Taylor et al.   JOURNAL OF INFECTIOUS DISEASES

Independent Emergence of Artemisinin Resistance Mutations Among Plasmodium falciparum in Southeast Asia

(2014) Shannon Takala-Harrison et al.   JOURNAL OF INFECTIOUS DISEASES

Artemisinin Resistance: The More We Know, the More Complicated It Appears

(2014) C. Hopkins Sibley   JOURNAL OF INFECTIOUS DISEASES

K13-Propeller Polymorphisms in Plasmodium falciparum Parasites From Sub-Saharan Africa

(2014) E. Kamau et al.   JOURNAL OF INFECTIOUS DISEASES

Genome editing in the human malaria parasite Plasmodium falciparum using the CRISPR-Cas9 system

(2014) Mehdi Ghorbal et al.   NATURE BIOTECHNOLOGY

Spread of Artemisinin Resistance in Plasmodium falciparum Malaria

(2014) Elizabeth A. Ashley et al.   NEW ENGLAND JOURNAL OF MEDICINE

Dihydroartemisinin–Piperaquine Failure in Cambodia

(2014) David L. Saunders et al.   NEW ENGLAND JOURNAL OF MEDICINE

K13-propeller mutations confer artemisinin resistance in Plasmodium falciparum clinical isolates

(2014) J. Straimer et al.   SCIENCE

Population transcriptomics of human malaria parasites reveals the mechanism of artemisinin resistance

(2014) S. Mok et al.   SCIENCE

On the unfounded enthusiasm for soft selective sweeps

(2014) Jeffrey D Jensen   Nature Communications

Generation of Antigenic Diversity in Plasmodium falciparum by Structured Rearrangement of Var Genes During Mitosis

(2014) Antoine Claessens et al.   PLoS Genetics

Novel phenotypic assays for the detection of artemisinin-resistant Plasmodium falciparum malaria in Cambodia: in-vitro and ex-vivo drug-response studies

(2013) Benoit Witkowski et al.   LANCET INFECTIOUS DISEASES

A molecular marker of artemisinin-resistant Plasmodium falciparum malaria

(2013) Frédéric Ariey et al.   NATURE

Multiple populations of artemisinin-resistant Plasmodium falciparum in Cambodia

(2013) Olivo Miotto et al.   NATURE GENETICS

Reduced Susceptibility of Plasmodium falciparum to Artesunate in Southern Myanmar

(2013) Myat P. Kyaw et al.   PLoS One

Population genomics of rapid adaptation by soft selective sweeps

(2013) Philipp W. Messer et al.   TRENDS IN ECOLOGY & EVOLUTION

Artemisinin resistance is a clear and present danger

(2013) Arjen M. Dondorp et al.   TRENDS IN PARASITOLOGY

Emergence of artemisinin-resistant malaria on the western border of Thailand: a longitudinal study

(2012) Aung Pyae Phyo et al.   LANCET

Using CF11 cellulose columns to inexpensively and effectively remove human DNA from Plasmodium falciparum-infected whole blood samples

(2012) Meera Venkatesan et al.   MALARIA JOURNAL

In vivo susceptibility of Plasmodium falciparum to artesunate in Binh Phuoc Province, Vietnam

(2012) Tran Hien et al.   MALARIA JOURNAL

Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing

(2012) Magnus Manske et al.   NATURE

Inference of Population Structure using Dense Haplotype Data

(2012) Daniel John Lawson et al.   PLoS Genetics

Protein-based signatures of functional evolution in Plasmodium falciparum

(2011) Kate B Gardner et al.   BMC EVOLUTIONARY BIOLOGY

Standardizing the measurement of parasite clearance in falciparum malaria: the parasite clearance estimator

(2011) Jennifer A Flegg et al.   MALARIA JOURNAL

An Effective Method to Purify Plasmodium falciparum DNA Directly from Clinical Blood Samples for Whole Genome High-Throughput Sequencing

(2011) Sarah Auburn et al.   PLoS One

Tracing the origins and signatures of selection of antifolate resistance in island populations of Plasmodium falciparum

(2010) Patrícia Salgueiro et al.   BMC INFECTIOUS DISEASES

Plasmodium falciparum Accompanied the Human Expansion out of Africa

(2010) Kazuyuki Tanabe et al.   CURRENT BIOLOGY

SNP-o-matic

(2009) Heinrich Magnus Manske et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Darwinian and demographic forces affecting human protein coding genes

(2009) R. Nielsen et al.   GENOME RESEARCH

Effective size of the hierarchically structured populations of the agent of malaria: a coalescent-based model

(2009) F Prugnolle et al.   HEREDITY

Artemisinin Resistance inPlasmodium falciparumMalaria

(2009) Arjen M. Dondorp et al.   NEW ENGLAND JOURNAL OF MEDICINE

Spread and evolution of Plasmodium falciparum drug resistance

(2009) Toshihiro Mita et al.   PARASITOLOGY INTERNATIONAL

A novel series of compositionally biased substitution matrices for comparing Plasmodium proteins

(2008) Kevin Brick et al.   BMC BIOINFORMATICS

Accurate whole human genome sequencing using reversible terminator chemistry

(2008) David R. Bentley et al.   NATURE