Using persistent homology and dynamical distances to analyze protein binding

Persistent topology for cryo-EM data analysis

(2015) Kelin Xia et al.   International Journal for Numerical Methods in Biomedical Engineering

Multidimensional persistence in biomolecular data

(2015) Kelin Xia et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Confidence sets for persistence diagrams

(2014) Brittany Terese Fasy et al.   ANNALS OF STATISTICS

Categorification of Persistent Homology

(2014) Peter Bubenik et al.   DISCRETE & COMPUTATIONAL GEOMETRY

Fréchet Means for Distributions of Persistence Diagrams

(2014) Katharine Turner et al.   DISCRETE & COMPUTATIONAL GEOMETRY

Persistent homology analysis of protein structure, flexibility, and folding

(2014) Kelin Xia et al.   International Journal for Numerical Methods in Biomedical Engineering

Dissipative Particle Dynamics with an Effective Pair Potential from Integral Equation Theory of Molecular Liquids

(2014) Alexander E. Kobryn et al.   JOURNAL OF PHYSICAL CHEMISTRY B

3D-RISM-Dock: A New Fragment-Based Drug Design Protocol

(2012) Dragan Nikolić et al.   Journal of Chemical Theory and Computation

Improving homology estimates with random walks

(2011) Paul Bendich et al.   INVERSE PROBLEMS

Approximating cycles in a shortest basis of the first homology group from point data

(2011) Tamal K Dey et al.   INVERSE PROBLEMS

Probability measures on the space of persistence diagrams

(2011) Yuriy Mileyko et al.   INVERSE PROBLEMS

Allosteric control of ligand-binding affinity using engineered conformation-specific effector proteins

(2011) Shahir S Rizk et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Nonparametric inference for extrinsic means on size-and-(reflection)-shape manifolds with applications in medical imaging

(2009) Ananda Bandulasiri et al.   JOURNAL OF MULTIVARIATE ANALYSIS