A Quantitative Analysis of Complexity of Human Pathogen-Specific CD4 T Cell Responses in Healthy M. tuberculosis Infected South Africans

Definition of a pool of epitopes that recapitulates the T cell reactivity against major house dust mite allergens

(2015) D. Hinz et al.   CLINICAL AND EXPERIMENTAL ALLERGY

Tuberculosis vaccines: barriers and prospects on the quest for a transformative tool

(2015) Christopher L. Karp et al.   IMMUNOLOGICAL REVIEWS

Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells

(2015) Florian Buettner et al.   NATURE BIOTECHNOLOGY

Impairment of immunity to Candida and Mycobacterium in humans with bi-allelic RORC mutations

(2015) S. Okada et al.   SCIENCE

The TB-specific CD4 + T cell immune repertoire in both cynomolgus and rhesus macaques largely overlap with humans

(2015) Bianca R. Mothé et al.   TUBERCULOSIS

Automatic Generation of Validated Specific Epitope Sets

(2015) Sebastian Carrasco Pro et al.   Journal of Immunology Research

Gamma Interferon Release Assays for Detection of Mycobacterium tuberculosis Infection

(2014) M. Pai et al.   CLINICAL MICROBIOLOGY REVIEWS

CyTOF supports efficient detection of immune cell subsets from small samples

(2014) Yi Yao et al.   JOURNAL OF IMMUNOLOGICAL METHODS

Naive Precursor Frequencies and MHC Binding Rather Than the Degree of Epitope Diversity Shape CD8+ T Cell Immunodominance

(2014) M. F. Kotturi et al.   JOURNAL OF IMMUNOLOGY

Distinct, Specific IL-17- and IL-22-Producing CD4+ T Cell Subsets Contribute to the Human Anti-Mycobacterial Immune Response

(2014) T. J. Scriba et al.   JOURNAL OF IMMUNOLOGY

Integrating Social Contact and Environmental Data in Evaluating Tuberculosis Transmission in a South African Township

(2014) Jason R. Andrews et al.   JOURNAL OF INFECTIOUS DISEASES

Beyond model antigens: high-dimensional methods for the analysis of antigen-specific T cells

(2014) Evan W Newell et al.   NATURE BIOTECHNOLOGY

Single-cell RNA-seq: advances and future challenges

(2014) Antoine-Emmanuel Saliba et al.   NUCLEIC ACIDS RESEARCH

The immune epitope database (IEDB) 3.0

(2014) Randi Vita et al.   NUCLEIC ACIDS RESEARCH

Allele frequency net 2015 update: new features for HLA epitopes, KIR and disease and HLA adverse drug reaction associations

(2014) Faviel F. González-Galarza et al.   NUCLEIC ACIDS RESEARCH

Characterization of a Cross-Reactive, Immunodominant and HLA-Promiscuous Epitope of Mycobacterium tuberculosis-Specific Major Antigenic Protein PPE68

(2014) Abu S. Mustafa   PLoS One

Immunological consequences of intragenus conservation ofMycobacterium tuberculosisT-cell epitopes

(2014) Cecilia S. Lindestam Arlehamn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A strategy to determine HLA class II restriction broadly covering the DR, DP, and DQ allelic variants most commonly expressed in the general population

(2013) Denise M. McKinney et al.   IMMUNOGENETICS

Combinatorial tetramer staining and mass cytometry analysis facilitate T-cell epitope mapping and characterization

(2013) Evan W Newell et al.   NATURE BIOTECHNOLOGY

TB Incidence in an Adolescent Cohort in South Africa

(2013) Hassan Mahomed et al.   PLoS One

Comprehensive analysis of dengue virus-specific responses supports an HLA-linked protective role for CD8+ T cells

(2013) D. Weiskopf et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Previously undescribed grass pollen antigens are the major inducers of T helper 2 cytokine-producing T cells in allergic individuals

(2013) Véronique Schulten et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Memory T Cells in Latent Mycobacterium tuberculosis Infection Are Directed against Three Antigenic Islands and Largely Contained in a CXCR3+CCR6+ Th1 Subset

(2013) Cecilia S. Lindestam Arlehamn et al.   PLoS Pathogens

Higher Throughput Methods of Identifying T Cell Epitopes for Studying Outcomes of Altered Antigen Processing and Presentation

(2013) Evan W. Newell   Frontiers in Immunology

Cytometry by Time-of-Flight Shows Combinatorial Cytokine Expression and Virus-Specific Cell Niches within a Continuum of CD8+ T Cell Phenotypes

(2012) Evan W. Newell et al.   IMMUNITY

Inborn Errors of Human JAKs and STATs

(2012) Jean-Laurent Casanova et al.   IMMUNITY

MHC Class II Tetramers

(2012) G. T. Nepom   JOURNAL OF IMMUNOLOGY

Analysis of T Cell Responses to the Major Allergens from German Cockroach: Epitope Specificity and Relationship to IgE Production

(2012) C. Oseroff et al.   JOURNAL OF IMMUNOLOGY

Dissecting Mechanisms of Immunodominance to the Common Tuberculosis Antigens ESAT-6, CFP10, Rv2031c (hspX), Rv2654c (TB7.7), and Rv1038c (EsxJ)

(2012) C. S. Lindestam Arlehamn et al.   JOURNAL OF IMMUNOLOGY

T Cell Responses to Known Allergen Proteins Are Differently Polarized and Account for a Variable Fraction of Total Response to Allergen Extracts

(2012) C. Oseroff et al.   JOURNAL OF IMMUNOLOGY

Identification of a human immunodominant T-cell epitope of mycobacterium tuberculosis antigen PPE44

(2011) Barbara Cuccu et al.   BMC MICROBIOLOGY

Functional classification of class II human leukocyte antigen (HLA) molecules reveals seven different supertypes and a surprising degree of repertoire sharing across supertypes

(2011) Jason Greenbaum et al.   IMMUNOGENETICS

Outbreaks of Mycobacterium Tuberculosis MDR Strains Induce High IL-17 T-Cell Response in Patients With MDR Tuberculosis That Is Closely Associated With High Antigen Load

(2011) Juan I. Basile et al.   JOURNAL OF INFECTIOUS DISEASES

The role of IL-10 in immune regulation during M. tuberculosis infection

(2011) P S Redford et al.   Mucosal Immunology

The Tuberculin Skin Test versus QuantiFERON TB Gold® in Predicting Tuberculosis Disease in an Adolescent Cohort Study in South Africa

(2011) Hassan Mahomed et al.   PLoS One

Single-Cell Mass Cytometry of Differential Immune and Drug Responses Across a Human Hematopoietic Continuum

(2011) S. C. Bendall et al.   SCIENCE

Differentiation of Effector CD4 T Cell Populations

(2010) Jinfang Zhu et al.   Annual Review of Immunology

Divergent Motifs but Overlapping Binding Repertoires of Six HLA-DQ Molecules Frequently Expressed in the Worldwide Human Population

(2010) J. Sidney et al.   JOURNAL OF IMMUNOLOGY

Five HLA-DP Molecules Frequently Expressed in the Worldwide Human Population Share a Common HLA Supertypic Binding Specificity

(2010) John Sidney et al.   JOURNAL OF IMMUNOLOGY

Molecular Determinants of T Cell Epitope Recognition to the Common Timothy Grass Allergen

(2010) C. Oseroff et al.   JOURNAL OF IMMUNOLOGY

The IMGT/HLA database

(2010) J. Robinson et al.   NUCLEIC ACIDS RESEARCH

TubercuList – 10 years after

(2010) Jocelyne M. Lew et al.   TUBERCULOSIS

Evasion and subversion of antigen presentation byMycobacterium tuberculosis

(2009) A. Baena et al.   TISSUE ANTIGENS

Systematic Genetic Nomenclature for Type VII Secretion Systems

(2009) Wilbert Bitter et al.   PLoS Pathogens

Efficient Testing of Large Pools of Mycobacterium tuberculosis RD1 Peptides and Identification of Major Antigens and Immunodominant Peptides Recognized by Human Th1 Cells

(2008) A. S. Mustafa et al.   Clinical and Vaccine Immunology

Immunomic Analysis of the Repertoire of T-Cell Specificities for Influenza A Virus in Humans

(2008) E. Assarsson et al.   JOURNAL OF VIROLOGY

Th1 Cell Reactivity and HLA-DR Binding Prediction for Promiscuous Recognition of MPT63 (Rv1926c), a Major Secreted Protein ofMycobacterium tuberculosis

(2008) A. S. Mustafa   SCANDINAVIAN JOURNAL OF IMMUNOLOGY