Identification of Low- and High-Impact Hemagglutinin Amino Acid Substitutions That Drive Antigenic Drift of Influenza A(H1N1) Viruses

Identification of Amino Acid Substitutions Supporting Antigenic Change of Influenza A(H1N1)pdm09 Viruses

(2015) Björn F. Koel et al.   JOURNAL OF VIROLOGY

Prediction is worth a shot

(2014) Katia Koelle et al.   NATURE

A predictive fitness model for influenza

(2014) Marta Łuksza et al.   NATURE

WHO recommendations for the viruses used in the 2013–2014 Northern Hemisphere influenza vaccine: Epidemiology, antigenic and genetic characteristics of influenza A(H1N1)pdm09, A(H3N2) and B influenza viruses collected from October 2012 to January 2013

(2014) Ian G. Barr et al.   VACCINE

Integrating influenza antigenic dynamics with molecular evolution

(2014) Trevor Bedford et al.   eLife

Predicting evolution from the shape of genealogical trees

(2014) Richard A Neher et al.   eLife

Substitutions Near the Receptor Binding Site Determine Major Antigenic Change During Influenza Virus Evolution

(2013) B. F. Koel et al.   SCIENCE

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolution of the receptor binding properties of the influenza A(H3N2) hemagglutinin

(2012) Y. P. Lin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

WHO recommendations for the viruses to be used in the 2012 Southern Hemisphere Influenza Vaccine: Epidemiology, antigenic and genetic characteristics of influenza A(H1N1)pdm09, A(H3N2) and B influenza viruses collected from February to September 2011

(2012) Alexander I. Klimov et al.   VACCINE

Antigenic sites of H1N1 influenza virus hemagglutinin revealed by natural isolates and inhibition assays

(2012) Jhang-Wei Huang et al.   VACCINE

Inference of Genotype–Phenotype Relationships in the Antigenic Evolution of Human Influenza A (H3N2) Viruses

(2012) Lars Steinbrück et al.   PLoS Computational Biology

Strength and tempo of selection revealed in viral gene genealogies

(2011) Trevor Bedford et al.   BMC EVOLUTIONARY BIOLOGY

Broadly neutralizing human antibody that recognizes the receptor-binding pocket of influenza virus hemagglutinin

(2011) J. R. R. Whittle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Prevalence of Epistasis in the Evolution of Influenza A Surface Proteins

(2011) Sergey Kryazhimskiy et al.   PLoS Genetics

FLU, an amino acid substitution model for influenza proteins

(2010) Cuong Dang et al.   BMC EVOLUTIONARY BIOLOGY

Altered Receptor Specificity and Cell Tropism of D222G Hemagglutinin Mutants Isolated from Fatal Cases of Pandemic A(H1N1) 2009 Influenza Virus

(2010) Y. Liu et al.   JOURNAL OF VIROLOGY

Neuraminidase Receptor Binding Variants of Human Influenza A(H3N2) Viruses Resulting from Substitution of Aspartic Acid 151 in the Catalytic Site: a Role in Virus Attachment?

(2010) Y. P. Lin et al.   JOURNAL OF VIROLOGY

Sequence-Based Prediction for Vaccine Strain Selection and Identification of Antigenic Variability in Foot-and-Mouth Disease Virus

(2010) Richard Reeve et al.   PLoS Computational Biology

Hemagglutinin Receptor Binding Avidity Drives Influenza A Virus Antigenic Drift

(2009) S. E. Hensley et al.   SCIENCE