The RNA Binding Specificity of Human APOBEC3 Proteins Resembles That of HIV-1 Nucleocapsid

APOBEC3 Proteins in Viral Immunity

(2015) Spyridon Stavrou et al.   JOURNAL OF IMMUNOLOGY

Design and bioinformatics analysis of genome-wide CLIP experiments

(2015) T. Wang et al.   NUCLEIC ACIDS RESEARCH

APOBECs and virus restriction

(2015) Reuben S. Harris et al.   VIROLOGY

Promiscuous RNA Binding Ensures Effective Encapsidation of APOBEC3 Proteins by HIV-1

(2015) Luis Apolonia et al.   PLoS Pathogens

Global Changes in the RNA Binding Specificity of HIV-1 Gag Regulate Virion Genesis

(2014) Sebla B. Kutluay et al.   CELL

Structural basis for hijacking CBF-β and CUL5 E3 ligase complex by HIV-1 Vif

(2014) Yingying Guo et al.   NATURE

A census of human RNA-binding proteins

(2014) Stefanie Gerstberger et al.   NATURE REVIEWS GENETICS

Structure-Guided Analysis of the Human APOBEC3-HIV Restrictome

(2014) Halil Aydin et al.   STRUCTURE

Mov10 and APOBEC3G Localization to Processing Bodies Is Not Required for Virion Incorporation and Antiviral Activity

(2013) T. Izumi et al.   JOURNAL OF VIROLOGY

Binding of RNA by APOBEC3G controls deamination-independent restriction of retroviruses

(2013) Kasandra Bélanger et al.   NUCLEIC ACIDS RESEARCH

cis-Acting Determinants of 7SL RNA Packaging by HIV-1

(2012) S. E. Keene et al.   JOURNAL OF VIROLOGY

APOBEC3A, APOBEC3B, and APOBEC3H Haplotype 2 Restrict Human T-Lymphotropic Virus Type 1

(2012) M. Ooms et al.   JOURNAL OF VIROLOGY

Suppression of HIV-1 Infection by APOBEC3 Proteins in Primary Human CD4+T Cells Is Associated with Inhibition of Processive Reverse Transcription as Well as Excessive Cytidine Deamination

(2012) Kieran Gillick et al.   JOURNAL OF VIROLOGY

HIV-1 Replication and APOBEC3 Antiviral Activity Are Not Regulated by P Bodies

(2012) P. K. Phalora et al.   JOURNAL OF VIROLOGY

Ensembl 2013

(2012) Paul Flicek et al.   NUCLEIC ACIDS RESEARCH

PARalyzer: definition of RNA binding sites from PAR-CLIP short-read sequence data

(2011) David L Corcoran et al.   GENOME BIOLOGY

Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP

(2010) Markus Hafner et al.   CELL

Analysis of the Initiating Events in HIV-1 Particle Assembly and Genome Packaging

(2010) Sebla B. Kutluay et al.   PLoS Pathogens

Evidence-ranked motif identification

(2010) Stoyan Georgiev et al.   GENOME BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Functional Analysis and Structural Modeling of Human APOBEC3G Reveal the Role of Evolutionarily Conserved Elements in the Inhibition of Human Immunodeficiency Virus Type 1 Infection and Alu Transposition

(2009) Y. Bulliard et al.   JOURNAL OF VIROLOGY

Architecture and secondary structure of an entire HIV-1 RNA genome

(2009) Joseph M. Watts et al.   NATURE

Model structure of APOBEC3C reveals a binding pocket modulating ribonucleic acid interaction required for encapsidation

(2009) B. Stauch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Intracellular interactions between APOBEC3G, RNA, and HIV-1 Gag: APOBEC3G multimerization is dependent on its association with RNA

(2009) Yeshitila N Friew et al.   Retrovirology

Restriction of HIV-1 by APOBEC3G is cytidine deaminase-dependent

(2009) Edward P. Browne et al.   VIROLOGY

RNA-Dependent Oligomerization of APOBEC3G Is Required for Restriction of HIV-1

(2009) Hendrik Huthoff et al.   PLoS Pathogens

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

HITS-CLIP yields genome-wide insights into brain alternative RNA processing

(2008) Donny D. Licatalosi et al.   NATURE

Characterization of APOBEC3G binding to 7SL RNA

(2008) Daniel Bach et al.   Retrovirology

Single-stranded RNA facilitates nucleocapsid: APOBEC3G complex formation

(2008) H. P. Bogerd et al.   RNA