Microbial Community Composition Impacts Pathogen Iron Availability during Polymicrobial Infection

Enterococcal Metabolite Cues Facilitate Interspecies Niche Modulation and Polymicrobial Infection

(2016) Damien Keogh et al.   Cell Host & Microbe

Respiratory syncytial virus infection enhancesPseudomonas aeruginosabiofilm growth through dysregulation of nutritional immunity

(2016) Matthew R. Hendricks et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Commensal Bacterium Promotes Virulence of an Opportunistic Pathogen via Cross-Respiration

(2016) Apollo Stacy et al.   mBio

The biogeography of polymicrobial infection

(2015) Apollo Stacy et al.   NATURE REVIEWS MICROBIOLOGY

Buried Treasure: Evolutionary Perspectives on Microbial Iron Piracy

(2015) Matthew F. Barber et al.   TRENDS IN GENETICS

Community-wide transcriptome of the oral microbiome in subjects with and without periodontitis

(2014) Ana E Duran-Pinedo et al.   ISME Journal

TargetRNA2: identifying targets of small regulatory RNAs in bacteria

(2014) Mary Beth Kery et al.   NUCLEIC ACIDS RESEARCH

HrrF Is the Fur-Regulated Small RNA in Nontypeable Haemophilus influenzae

(2014) Estevan A. Santana et al.   PLoS One

Bacterial fight-and-flight responses enhance virulence in a polymicrobial infection

(2014) A. Stacy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metatranscriptomics of the Human Oral Microbiome during Health and Disease

(2014) P. Jorth et al.   mBio

Requirements for Pseudomonas aeruginosa Acute Burn and Chronic Surgical Wound Infection

(2014) Keith H. Turner et al.   PLoS Genetics

Protective Effects of Human Lactoferrin during Aggregatibacter actinomycetemcomitans-Induced Bacteremia in Lactoferrin-Deficient Mice

(2013) S. K. Velusamy et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Probiotic Bacteria Reduce Salmonella Typhimurium Intestinal Colonization by Competing for Iron

(2013) Elisa Deriu et al.   Cell Host & Microbe

Probing Bacterial Metabolism during Infection Using High-Resolution Transcriptomics

(2013) P. Jorth et al.   JOURNAL OF BACTERIOLOGY

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Transcriptional Regulation of Aggregatibacter actinomycetemcomitans lsrACDBFG and lsrRK Operons and Their Role in Biofilm Formation

(2012) A. Torres-Escobar et al.   JOURNAL OF BACTERIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Nutritional immunity: transition metals at the pathogen–host interface

(2012) M. Indriati Hood et al.   NATURE REVIEWS MICROBIOLOGY

Structure and regulon of Campylobacter jejuni ferric uptake regulator Fur define apo-Fur regulation

(2012) J. Butcher et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

GC-Content Normalization for RNA-Seq Data

(2011) Davide Risso et al.   BMC BIOINFORMATICS

A Statistical Framework for the Analysis of ChIP-Seq Data

(2011) Pei Fen Kuan et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

The cyclic-AMP receptor protein (CRP) regulon in Aggregatibacter actinomycetemcomitans includes leukotoxin

(2011) Leigh A. Feuerbacher et al.   MICROBIAL PATHOGENESIS

Mapping the regulon of Vibrio cholerae ferric uptake regulator expands its known network of gene regulation

(2011) B. W. Davies et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabolite Cross-Feeding Enhances Virulence in a Model Polymicrobial Infection

(2011) Matthew M. Ramsey et al.   PLoS Pathogens

Molecular Mechanisms ofStaphylococcus aureusIron Acquisition

(2010) Neal D. Hammer et al.   Annual Review of Microbiology

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Periodontitis: a polymicrobial disruption of host homeostasis

(2010) Richard P. Darveau   NATURE REVIEWS MICROBIOLOGY

This Is Not Your Mother's Repressor: the Complex Role of Fur in Pathogenesis

(2009) B. M. Carpenter et al.   INFECTION AND IMMUNITY

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Toward an Online Repository of Standard Operating Procedures (SOPs) for (Meta)genomic Annotation

(2008) Samuel V. Angiuoli et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Structure of glycerol-3-phosphate dehydrogenase, an essential monotopic membrane enzyme involved in respiration and metabolism

(2008) J. I. Yeh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA