MLST and Whole-Genome-Based Population Analysis of Cryptococcus gattii VGIII Links Clinical, Veterinary and Environmental Strains, and Reveals Divergent Serotype Specific Sub-populations and Distant Ancestors

Recognition of seven species in the Cryptococcus gattii/Cryptococcus neoformans species complex

(2015) Ferry Hagen et al.   FUNGAL GENETICS AND BIOLOGY

Genome Evolution and Innovation across the Four Major Lineages of Cryptococcus gattii

(2015) Rhys A. Farrer et al.   mBio

Cryptococcus gattii Infections

(2014) Sharon C.-A. Chen et al.   CLINICAL MICROBIOLOGY REVIEWS

Phenotypic Differences of Cryptococcus Molecular Types and Their Implications for Virulence in a Drosophila Model of Infection

(2014) George R. Thompson et al.   INFECTION AND IMMUNITY

Antifungal Drug Susceptibility and Phylogenetic Diversity among Cryptococcus Isolates from Dogs and Cats in North America

(2014) L. M. Singer et al.   JOURNAL OF CLINICAL MICROBIOLOGY

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Highly Recombinant VGII Cryptococcus gattii Population Develops Clonal Outbreak Clusters through both Sexual Macroevolution and Asexual Microevolution

(2014) R. B. Billmyre et al.   mBio

Cryptococcus gattii in North American Pacific Northwest: Whole-Population Genome Analysis Provides Insights into Species Evolution and Dispersal

(2014) D. M. Engelthaler et al.   mBio

Retrospective Study of the Epidemiology and Clinical Manifestations of Cryptococcus gattii Infections in Colombia from 1997–2011

(2014) Jairo Lizarazo et al.   PLoS Neglected Tropical Diseases

Cryptococcus gattii VGIII Isolates Causing Infections in HIV/AIDS Patients in Southern California: Identification of the Local Environmental Source as Arboreal

(2014) Deborah J. Springer et al.   PLoS Pathogens

The large-scale blast score ratio (LS-BSR) pipeline: a method to rapidly compare genetic content between bacterial genomes

(2014) Jason W. Sahl et al.   PeerJ

Rapid and robust phylotyping of spa t003, a dominant MRSA clone in Luxembourg and other European countries

(2013) David M Engelthaler et al.   BMC INFECTIOUS DISEASES

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

First environmental isolation ofCryptococcus gattii, genotype AFLP5, from India and a global review

(2013) A. Chowdhary et al.   MYCOSES

Cryptococcus gattiiin urban trees from cities in North-eastern Argentina

(2013) Mariana Mazza et al.   MYCOSES

Cryptococcus gattii in the United States: Genotypic Diversity of Human and Veterinary Isolates

(2013) Shawn R. Lockhart et al.   PLoS One

Cryptococcus neoformans-Cryptococcus gattii Species Complex: an International Study of Wild-Type Susceptibility Endpoint Distributions and Epidemiological Cutoff Values for Amphotericin B and Flucytosine

(2012) A. Espinel-Ingroff et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Cryptococcus neoformans-Cryptococcus gattii Species Complex: an International Study of Wild-Type Susceptibility Endpoint Distributions and Epidemiological Cutoff Values for Fluconazole, Itraconazole, Posaconazole, and Voriconazole

(2012) A. Espinel-Ingroff et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods

(2012) Alexandre P Francisco et al.   BMC BIOINFORMATICS

Epidemiologic cutoff values for triazole drugs in Cryptococcus gattii: correlation of molecular type and in vitro susceptibility

(2012) Shawn R. Lockhart et al.   DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Correlation of antifungal susceptibility and molecular type within theCryptococcus neoformans/C. gattiispecies complex

(2012) Luciana Trilles et al.   MEDICAL MYCOLOGY

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Whole Genome Sequence Typing to Investigate the Apophysomyces Outbreak following a Tornado in Joplin, Missouri, 2011

(2012) Kizee A. Etienne et al.   PLoS One

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

The Primary Target Organ of Cryptococcus gattii Is Different from That of Cryptococcus neoformans in a Murine Model

(2012) P. Ngamskulrungroj et al.   mBio

Inference of Population Structure using Dense Haplotype Data

(2012) Daniel John Lawson et al.   PLoS Genetics

Cryptococcus gattii in the United States: Clinical Aspects of Infection With an Emerging Pathogen

(2011) J. R. Harris et al.   CLINICAL INFECTIOUS DISEASES

Clinical features and epidemiology of cryptococcosis in cats and dogs in California: 93 cases (1988–2010)

(2011) Sameer R. Trivedi et al.   JAVMA-JOURNAL OF THE AMERICAN VETERINARY MEDICAL ASSOCIATION

Cryptococcus gattii: an emerging fungal pathogen infecting humans and animals

(2011) Edmond J. Byrnes et al.   MICROBES AND INFECTION

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Clonality and α-a Recombination in the Australian Cryptococcus gattii VGII Population - An Emerging Outbreak in Australia

(2011) Fabian Carriconde et al.   PLoS One

Fatal Disseminated Cryptococcus gattii Infection in New Mexico

(2011) Carla J. Walraven et al.   PLoS One

Whole Genome Sequence Analysis of Cryptococcus gattii from the Pacific Northwest Reveals Unexpected Diversity

(2011) John D. Gillece et al.   PLoS One

A Diverse Population of Cryptococcus gattii Molecular Type VGIII in Southern Californian HIV/AIDS Patients

(2011) Edmond J. Byrnes et al.   PLoS Pathogens

In Vitro Antifungal Susceptibilities and Amplified Fragment Length Polymorphism Genotyping of a Worldwide Collection of 350 Clinical, Veterinary, and Environmental Cryptococcus gattii Isolates

(2010) F. Hagen et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Clinical Practice Guidelines for the Management of Cryptococcal Disease: 2010 Update by the Infectious Diseases Society of America

(2010) John R. Perfect et al.   CLINICAL INFECTIOUS DISEASES

Prevalence of the VNIc genotype of Cryptococcus neoformans  in non-HIV-associated cryptococcosis in the Republic of Korea

(2010) Young Hwa Choi et al.   FEMS YEAST RESEARCH

In Vitro Susceptibility of the Yeast Pathogen Cryptococcus to Fluconazole and Other Azoles Varies with Molecular Genotype

(2010) H. S. Chong et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Isolation ofCryptococcus gattiimolecular type VGIII, fromCorymbia ficifoliadetritus in Colombia

(2010) P. Escandón et al.   MEDICAL MYCOLOGY

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Genotyping of MexicanCryptococcus neoformansandC. gattiiisolates by PCR-fingerprinting

(2009) L. R. Castañón Olivares et al.   MEDICAL MYCOLOGY

Consensus multi-locus sequence typing scheme forCryptococcus neoformansandCryptococcus gattii

(2009) Wieland Meyer et al.   MEDICAL MYCOLOGY

Molecular typing and antifungal susceptibility of clinical and environmental Cryptococcus neoformans species complex isolates in Goiania, Brazil

(2009) L. K. H. Souza et al.   MYCOSES

Genetic Diversity of the Cryptococcus Species Complex Suggests that Cryptococcus gattii Deserves to Have Varieties

(2009) Popchai Ngamskulrungroj et al.   PLoS One

The fatal fungal outbreak on Vancouver Island is characterized by enhanced intracellular parasitism driven by mitochondrial regulation

(2009) H. Ma et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regional pattern of the molecular types of Cryptococcus neoformans and Cryptococcus gattii in Brazil

(2008) Luciana Trilles et al.   MEMORIAS DO INSTITUTO OSWALDO CRUZ