Winner's Curse Correction and Variable Thresholding Improve Performance of Polygenic Risk Modeling Based on Genome-Wide Association Study Summary-Level Data
Published 2016 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Winner's Curse Correction and Variable Thresholding Improve Performance of Polygenic Risk Modeling Based on Genome-Wide Association Study Summary-Level Data
Authors
Keywords
Genome-wide association studies, Forecasting, Molecular genetics, Lung and intrathoracic tumors, Heredity, Blood, Histones, Genetics of disease
Journal
PLoS Genetics
Volume 12, Issue 12, Pages e1006493
Publisher
Public Library of Science (PLoS)
Online
2017-01-10
DOI
10.1371/journal.pgen.1006493
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Developing and evaluating polygenic risk prediction models for stratified disease prevention
- (2016) Nilanjan Chatterjee et al. NATURE REVIEWS GENETICS
- Joint Analysis of Psychiatric Disorders Increases Accuracy of Risk Prediction for Schizophrenia, Bipolar Disorder, and Major Depressive Disorder
- (2015) Robert Maier et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Modeling Linkage Disequilibrium Increases Accuracy of Polygenic Risk Scores
- (2015) Bjarni J. Vilhjálmsson et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Analysis of Heritability and Shared Heritability Based on Genome-Wide Association Studies for Thirteen Cancer Types
- (2015) Joshua N. Sampson et al. JNCI-Journal of the National Cancer Institute
- Prediction of Breast Cancer Risk Based on Profiling With Common Genetic Variants
- (2015) Nasim Mavaddat et al. JNCI-Journal of the National Cancer Institute
- Genetic studies of body mass index yield new insights for obesity biology
- (2015) Adam E. Locke et al. NATURE
- Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer
- (2015) Kyriaki Michailidou et al. NATURE GENETICS
- Partitioning heritability by functional annotation using genome-wide association summary statistics
- (2015) Hilary K Finucane et al. NATURE GENETICS
- Analysis of Heritability and Shared Heritability Based on Genome-Wide Association Studies for Thirteen Cancer Types
- (2015) Joshua N. Sampson et al. JNCI-Journal of the National Cancer Institute
- Prediction of Breast Cancer Risk Based on Profiling With Common Genetic Variants
- (2015) Nasim Mavaddat et al. JNCI-Journal of the National Cancer Institute
- Effective Genetic-Risk Prediction Using Mixed Models
- (2014) David Golan et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Partitioning Heritability of Regulatory and Cell-Type-Specific Variants across 11 Common Diseases
- (2014) Alexander Gusev et al. AMERICAN JOURNAL OF HUMAN GENETICS
- MultiBLUP: improved SNP-based prediction for complex traits
- (2014) Doug Speed et al. GENOME RESEARCH
- A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer
- (2014) Ali Amin Al Olama et al. NATURE GENETICS
- Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer
- (2014) Brian M Wolpin et al. NATURE GENETICS
- Rare variants of large effect in BRCA2 and CHEK2 affect risk of lung cancer
- (2014) Yufei Wang et al. NATURE GENETICS
- Defining the role of common variation in the genomic and biological architecture of adult human height
- (2014) Andrew R Wood et al. NATURE GENETICS
- Comprehensive Functional Annotation of 77 Prostate Cancer Risk Loci
- (2014) Dennis J. Hazelett et al. PLoS Genetics
- Improved Detection of Common Variants Associated with Schizophrenia by Leveraging Pleiotropy with Cardiovascular-Disease Risk Factors
- (2013) Ole A. Andreassen et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Global Analysis of DNA Methylation Variation in Adipose Tissue from Twins Reveals Links to Disease-Associated Variants in Distal Regulatory Elements
- (2013) Elin Grundberg et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals
- (2013) A. Battle et al. GENOME RESEARCH
- Genome-wide association study identifies multiple loci associated with bladder cancer risk
- (2013) Jonine D. Figueroa et al. HUMAN MOLECULAR GENETICS
- Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis
- (2013) LANCET
- Genetic relationship between five psychiatric disorders estimated from genome-wide SNPs
- (2013) S Hong Lee et al. NATURE GENETICS
- Projecting the performance of risk prediction based on polygenic analyses of genome-wide association studies
- (2013) Nilanjan Chatterjee et al. NATURE GENETICS
- Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture
- (2013) Sonja I Berndt et al. NATURE GENETICS
- Systematic identification of trans eQTLs as putative drivers of known disease associations
- (2013) Harm-Jan Westra et al. NATURE GENETICS
- Coordinated Effects of Sequence Variation on DNA Binding, Chromatin Structure, and Transcription
- (2013) H. Kilpinen et al. SCIENCE
- Identification of Genetic Variants That Affect Histone Modifications in Human Cells
- (2013) G. McVicker et al. SCIENCE
- Power and Predictive Accuracy of Polygenic Risk Scores
- (2013) Frank Dudbridge PLoS Genetics
- All SNPs Are Not Created Equal: Genome-Wide Association Studies Reveal a Consistent Pattern of Enrichment among Functionally Annotated SNPs
- (2013) Andrew J. Schork et al. PLoS Genetics
- Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis
- (2012) Ulrike Peters et al. GASTROENTEROLOGY
- Influence of common genetic variation on lung cancer risk: meta-analysis of 14 900 cases and 29 485 controls
- (2012) Maria N. Timofeeva et al. HUMAN MOLECULAR GENETICS
- Genome-wide association analysis identifies new lung cancer susceptibility loci in never-smoking women in Asia
- (2012) Qing Lan et al. NATURE GENETICS
- Bayesian inference analyses of the polygenic architecture of rheumatoid arthritis
- (2012) Eli A Stahl et al. NATURE GENETICS
- Mapping cis- and trans-regulatory effects across multiple tissues in twins
- (2012) Elin Grundberg et al. NATURE GENETICS
- Lung eQTLs to Help Reveal the Molecular Underpinnings of Asthma
- (2012) Ke Hao et al. PLoS Genetics
- A high-resolution map of human evolutionary constraint using 29 mammals
- (2011) Kerstin Lindblad-Toh et al. NATURE
- GCTA: A Tool for Genome-wide Complex Trait Analysis
- (2010) Jian Yang et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Biological, clinical and population relevance of 95 loci for blood lipids
- (2010) Tanya M. Teslovich et al. NATURE
- Hundreds of variants clustered in genomic loci and biological pathways affect human height
- (2010) Hana Lango Allen et al. NATURE
- A multi-stage genome-wide association study of bladder cancer identifies multiple susceptibility loci
- (2010) Nathaniel Rothman et al. NATURE GENETICS
- Estimation of effect size distribution from genome-wide association studies and implications for future discoveries
- (2010) Ju-Hyun Park et al. NATURE GENETICS
- Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index
- (2010) Elizabeth K Speliotes et al. NATURE GENETICS
- Common SNPs explain a large proportion of the heritability for human height
- (2010) Jian Yang et al. NATURE GENETICS
- Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis
- (2010) Benjamin F Voight et al. NATURE GENETICS
- A Genome-wide Association Study of Lung Cancer Identifies a Region of Chromosome 5p15 Associated with Risk for Adenocarcinoma
- (2009) Maria Teresa Landi et al. AMERICAN JOURNAL OF HUMAN GENETICS
- A Flexible and Accurate Genotype Imputation Method for the Next Generation of Genome-Wide Association Studies
- (2009) Bryan N. Howie et al. PLoS Genetics
- Bias-reduced estimators and confidence intervals for odds ratios in genome-wide association studies
- (2008) H. Zhong et al. BIOSTATISTICS
- The Bayesian Lasso
- (2008) Trevor Park et al. JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started