Structural Identifiability of Dynamic Systems Biology Models

Model calibration and uncertainty analysis in signaling networks

(2016) Tim Heinemann et al.   CURRENT OPINION IN BIOTECHNOLOGY

A fast algorithm to assess local structural identifiability

(2015) Johannes D. Stigter et al.   AUTOMATICA

BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology

(2015) Alejandro F Villaverde et al.   BMC Systems Biology

DYVIPAC: an integrated analysis and visualisation framework to probe multi-dimensional biological networks

(2015) Lan K. Nguyen et al.   Scientific Reports

Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models

(2015) Jonathan R. Karr et al.   PLoS Computational Biology

MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics

(2014) Jose A Egea et al.   BMC BIOINFORMATICS

On Finding and Using Identifiable Parameter Combinations in Nonlinear Dynamic Systems Biology Models and COMBOS: A Novel Web Implementation

(2014) Nicolette Meshkat et al.   PLoS One

On the observability and identifiability of nonlinear structural and mechanical systems

(2014) Manolis N. Chatzis et al.   Structural Control & Health Monitoring

Structural identifiability analyses of candidate models for in vitro Pitavastatin hepatic uptake

(2013) Thomas R.B. Grandjean et al.   COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE

Reverse engineering and identification in systems biology: strategies, perspectives and challenges

(2013) A. F. Villaverde et al.   Journal of the Royal Society Interface

CRNreals: a toolbox for distinguishability and identifiability analysis of biochemical reaction networks

(2012) G. Szederkenyi et al.   BIOINFORMATICS

A Whole-Cell Computational Model Predicts Phenotype from Genotype

(2012) Jonathan R. Karr et al.   CELL

On the identifiability of metabolic network models

(2012) Sara Berthoumieux et al.   JOURNAL OF MATHEMATICAL BIOLOGY

Structural Identifiability of Systems Biology Models: A Critical Comparison of Methods

(2011) Oana-Teodora Chis et al.   PLoS One

On Identifiability of Nonlinear ODE Models and Applications in Viral Dynamics

(2011) Hongyu Miao et al.   SIAM REVIEW

Dynamic Mathematical Modeling of IL13-Induced Signaling in Hodgkin and Primary Mediastinal B-Cell Lymphoma Allows Prediction of Therapeutic Targets

(2010) V. Raia et al.   CANCER RESEARCH

Structural and practical identifiability analysis of partially observed dynamical models by exploiting the profile likelihood

(2009) A. Raue et al.   BIOINFORMATICS

A New Computational Tool for Establishing Model Parameter Identifiability

(2009) Elias August et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

An algorithm for finding globally identifiable parameter combinations of nonlinear ODE models using Gröbner Bases

(2009) Nicolette Meshkat et al.   MATHEMATICAL BIOSCIENCES

Optimal Experimental Design for Parameter Estimation of a Cell Signaling Model

(2009) Samuel Bandara et al.   PLoS Computational Biology