Kernel Architecture of the Genetic Circuitry of the Arabidopsis Circadian System

System identification of the Arabidopsis plant circadian system

(2015) Mathias Foo et al.   JOURNAL OF THE KOREAN PHYSICAL SOCIETY

Linked circadian outputs control elongation growth and flowering in response to photoperiod and temperature

(2015) D. D. Seaton et al.   Molecular Systems Biology

Systems biology definition of the core proteome of metabolism and expression is consistent with high-throughput data

(2015) Laurence Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular mechanisms of the circadian clockwork in mammals

(2014) I. Robinson et al.   FEBS LETTERS

Tissue-specific clocks in Arabidopsis show asymmetric coupling

(2014) Motomu Endo et al.   NATURE

Defining an essential transcription factor program for naive pluripotency

(2014) S.- J. Dunn et al.   SCIENCE

How pervasive are circadian oscillations?

(2014) V.R. Patel et al.   TRENDS IN CELL BIOLOGY

microRNA input into a neural ultradian oscillator controls emergence and timing of alternative cell states

(2014) Marc Goodfellow et al.   Nature Communications

Rethinking Transcriptional Activation in the Arabidopsis Circadian Clock

(2014) Karl Fogelmark et al.   PLoS Computational Biology

Optimal Schedules of Light Exposure for Rapidly Correcting Circadian Misalignment

(2014) Kirill Serkh et al.   PLoS Computational Biology

Modelling the widespread effects of TOC1 signalling on the plant circadian clock and its outputs

(2013) Alexandra Pokhilko et al.   BMC Systems Biology

Balanced Nucleocytosolic Partitioning Defines a Spatial Network to Coordinate Circadian Physiology in Plants

(2013) Yumi Kim et al.   DEVELOPMENTAL CELL

Photosynthetic entrainment of the Arabidopsis thaliana circadian clock

(2013) Michael J. Haydon et al.   NATURE

Complexity in the Wiring and Regulation of Plant Circadian Networks

(2012) Dawn H. Nagel et al.   CURRENT BIOLOGY

The clock gene circuit in Arabidopsis includes a repressilator with additional feedback loops

(2012) Alexandra Pokhilko et al.   Molecular Systems Biology

Transcriptional repressor PRR5 directly regulates clock-output pathways

(2012) N. Nakamichi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mapping the Core of the Arabidopsis Circadian Clock Defines the Network Structure of the Oscillator

(2012) W. Huang et al.   SCIENCE

The Arabidopsis clock: time for an about-face?

(2012) David E Somers   GENOME BIOLOGY

New Method for Parameter Estimation in Probabilistic Models: Minimum Probability Flow

(2011) Jascha Sohl-Dickstein et al.   PHYSICAL REVIEW LETTERS

Disruption of circadian clocks has ramifications for metabolism, brain, and behavior

(2011) I. N. Karatsoreos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tuning the Mammalian Circadian Clock: Robust Synergy of Two Loops

(2011) Angela Relógio et al.   PLoS Computational Biology

Genetic Co-Occurrence Network across Sequenced Microbes

(2011) Pan-Jun Kim et al.   PLoS Computational Biology

PRR5 regulates phosphorylation, nuclear import and subnuclear localization of TOC1 in the Arabidopsis circadian clock

(2010) Lei Wang et al.   EMBO JOURNAL

Transfer entropy—a model-free measure of effective connectivity for the neurosciences

(2010) Raul Vicente et al.   JOURNAL OF COMPUTATIONAL NEUROSCIENCE

Synthetic biology: applications come of age

(2010) Ahmad S. Khalil et al.   NATURE REVIEWS GENETICS

Macroscopic Kinetic Effect of Cell-to-Cell Variation in Biochemical Reactions

(2010) Pan-Jun Kim et al.   PHYSICAL REVIEW LETTERS

PSEUDO-RESPONSE REGULATORS 9, 7, and 5 Are Transcriptional Repressors in the Arabidopsis Circadian Clock

(2010) N. Nakamichi et al.   PLANT CELL

The Circadian System in Higher Plants

(2009) Stacey L. Harmer   Annual Review of Plant Biology

Time for circadian rhythms: plants get synchronized

(2009) Paloma Más et al.   CURRENT OPINION IN PLANT BIOLOGY

Effects of circadian disruption on the cardiometabolic system

(2009) Melanie Rüger et al.   REVIEWS IN ENDOCRINE & METABOLIC DISORDERS

Minimal Escherichia coli Cell for the Most Efficient Production of Ethanol from Hexoses and Pentoses

(2008) C. T. Trinh et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Sustained Oscillations in Extended Genetic Oscillatory Systems

(2008) Kwang-Il Goh et al.   BIOPHYSICAL JOURNAL

Nature, Nurture, or Chance: Stochastic Gene Expression and Its Consequences

(2008) Arjun Raj et al.   CELL

Simulating Dark Expressions and Interactions of frq and wc-1 in the Neurospora Circadian Clock

(2007) Christian I. Hong et al.   BIOPHYSICAL JOURNAL