Reconstruction of gene regulatory networks reveals chromatin remodelers and key transcription factors in tumorigenesis

The inactive X chromosome is epigenetically unstable and transcriptionally labile in breast cancer

(2015) Ronan Chaligné et al.   GENOME RESEARCH

Chromatin remodelers HELLS and UHRF1 mediate the epigenetic deregulation of genes that drive retinoblastoma tumor progression

(2015) Claudia A. Benavente et al.   Oncotarget

Aberrant Methylation and Reduced Expression of LHX9 in Malignant Gliomas of Childhood

(2015) Valentina Vladimirova et al.   NEOPLASIA

Senescence-secreted factors activate Myc and sensitize pretransformed cells to TRAIL-induced apoptosis

(2014) Jelena Vjetrovic et al.   AGING CELL

Twist1 Is a Key Regulator of Cancer-Associated Fibroblasts

(2014) K.-W. Lee et al.   CANCER RESEARCH

Dissecting Engineered Cell Types and Enhancing Cell Fate Conversion via CellNet

(2014) Samantha A. Morris et al.   CELL

CellNet: Network Biology Applied to Stem Cell Engineering

(2014) Patrick Cahan et al.   CELL

CellNet—Where Your Cells Are Standing

(2014) Kee-Pyo Kim et al.   CELL

Activation and repression by oncogenic MYC shape tumour-specific gene expression profiles

(2014) Susanne Walz et al.   NATURE

Identifying regulatory mechanisms underlying tumorigenesis using locus expression signature analysis

(2014) E. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plasminogen activator urokinase expression reveals TRAIL responsiveness and supports fractional survival of cancer cells

(2014) V Pavet et al.   Cell Death & Disease

A functional role for Smad7 in sustaining colon cancer cell growth and survival

(2014) C Stolfi et al.   Cell Death & Disease

Characterising ChIP-seq binding patterns by model-based peak shape deconvolution

(2013) Marco-Antonio Mendoza-Parra et al.   BMC GENOMICS

Modulation of antitumour immune responses by intratumoural Stat1 expression

(2013) Nicole L Messina et al.   IMMUNOLOGY AND CELL BIOLOGY

p19ARF and RasV12 Offer Opposing Regulation of DHX33 Translation To Dictate Tumor Cell Fate

(2013) Y. Zhang et al.   MOLECULAR AND CELLULAR BIOLOGY

HDAC2 overexpression confers oncogenic potential to human lung cancer cells by deregulating expression of apoptosis and cell cycle proteins

(2012) Kwang Hwa Jung et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

Rewiring drug-activated p53-regulatory network from suppressing to promoting tumorigenesis

(2012) Wei Song et al.   Journal of Molecular Cell Biology

The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data: Figure 1.

(2012) Ethan Cerami et al.   Cancer Discovery

Hallmarks of Cancer: The Next Generation

(2011) Douglas Hanahan et al.   CELL

Identification of DHX33 as a Mediator of rRNA Synthesis and Cell Growth

(2011) Y. Zhang et al.   MOLECULAR AND CELLULAR BIOLOGY

Coilin participates in the suppression of RNA polymerase I in response to cisplatin-induced DNA damage

(2011) Andrew S. Gilder et al.   MOLECULAR BIOLOGY OF THE CELL

CHD7 functions in the nucleolus as a positive regulator of ribosomal RNA biogenesis

(2010) Gabriel E. Zentner et al.   HUMAN MOLECULAR GENETICS

Epigenetic inactivation of T-box transcription factor 5, a novel tumor suppressor gene, is associated with colon cancer

(2010) J Yu et al.   ONCOGENE

A clustering approach for identification of enriched domains from histone modification ChIP-Seq data

(2009) Chongzhi Zang et al.   BIOINFORMATICS

The cancer genome

(2009) Michael R. Stratton et al.   NATURE

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Integrating and annotating the interactome using the MiMI plugin for cytoscape

(2008) Jing Gao et al.   BIOINFORMATICS

Hubba: hub objects analyzer—a framework of interactome hubs identification for network biology

(2008) Chung-Yen Lin et al.   NUCLEIC ACIDS RESEARCH

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH

Analysis of Myc-Induced Histone Modifications on Target Chromatin

(2008) Francesca Martinato et al.   PLoS One