Phylogeny and historical demography of endemic fishes in Lake Biwa: the ancient lake as a promoter of evolution and diversification of freshwater fishes in western Japan

Cryptic divergence and phylogeography of the pike gudgeon Pseudogobio esocinus (Teleostei: Cyprinidae): a comprehensive case of freshwater phylogeography in Japan

(2015) Koji Tominaga et al.   ICHTHYOLOGICAL RESEARCH

Genomic architecture of habitat-related divergence and signature of directional selection in the body shapes ofGnathopogonfishes

(2015) Ryo Kakioka et al.   MOLECULAR ECOLOGY

Phylogeny, hybridization, and life history evolution of Rhinogobius gobies in Japan, inferred from multiple nuclear gene sequences

(2015) Yo Y. Yamasaki et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Genetic population structure of Hemigrammocypris rasborella (Cyprinidae) inferred from mtDNA sequences

(2014) Katsutoshi Watanabe et al.   ICHTHYOLOGICAL RESEARCH

Molecular identification of species and ploidy of Carassius fishes in Lake Biwa, using mtDNA and microsatellite multiplex PCRs

(2014) Tappei Mishina et al.   ICHTHYOLOGICAL RESEARCH

Thermal adaptation and clinal mitochondrial DNA variation of European anchovy

(2014) G. Silva et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phylogenetic Relationships of Bitterling Fishes (Teleostei: Cypriniformes: Acheilognathinae), Inferred from Mitochondrial CytochromebSequences

(2014) Kouichi Kawamura et al.   ZOOLOGICAL SCIENCE

Multiple colonizations of Lake Biwa by Sarcocheilichthys fishes and their population history

(2013) Takefumi Komiya et al.   ENVIRONMENTAL BIOLOGY OF FISHES

Speciation in fishes

(2013) Giacomo Bernardi   MOLECULAR ECOLOGY

Adaptive Genetic Variation on the Landscape: Methods and Cases

(2012) Sean D. Schoville et al.   Annual Review of Ecology Evolution and Systematics

Hidden mitochondrial DNA divergence in the Lake Biwa endemic goby Gymnogobius isaza: implications for its evolutionary history

(2012) Ryoichi Tabata et al.   ENVIRONMENTAL BIOLOGY OF FISHES

The origins of limnetic forms and cryptic divergence in Gnathopogon fishes (Cyprinidae) in Japan

(2012) Ryo Kakioka et al.   ENVIRONMENTAL BIOLOGY OF FISHES

Quaternary palaeoenvironmental oscillations drove the evolution of the EurasianCarassius auratuscomplex (Cypriniformes, Cyprinidae)

(2012) Yun Gao et al.   JOURNAL OF BIOGEOGRAPHY

Origins of Shared Genetic Variation in African Cichlids

(2012) Yong-Hwee E. Loh et al.   MOLECULAR BIOLOGY AND EVOLUTION

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Speciation in the White-breasted Nuthatch (Sitta carolinensis): a multilocus perspective

(2011) V. WOODY WALSTROM et al.   MOLECULAR ECOLOGY

A Novel Resource Polymorphism in Fish, Driven by Differential Bottom Environments: An Example from an Ancient Lake in Japan

(2011) Takefumi Komiya et al.   PLoS One

Predicting the spatial distribution of the invasive piscivorous chub (Opsariichthys uncirostris uncirostris) in the irrigation ditches of Kyushu, Japan: a tool for the risk management of biological invasions

(2010) Mayumi Sato et al.   BIOLOGICAL INVASIONS

Bayesian random local clocks, or one rate to rule them all

(2010) Alexei J Drummond et al.   BMC BIOLOGY

Biogeography and evolution of the Carassius auratus-complex in East Asia

(2010) Mikumi Takada et al.   BMC EVOLUTIONARY BIOLOGY

Faunal structure of Japanese freshwater fishes and its artificial disturbance

(2010) Katsutoshi Watanabe   ENVIRONMENTAL BIOLOGY OF FISHES

Osteology of Ischikauia steenackeri (Teleostei: Cypriniformes) with comments on its systematic position

(2010) Hiroaki Takeuchi et al.   ICHTHYOLOGICAL RESEARCH

SNP signatures of selection on standing genetic variation and their association with adaptive phenotypes along gradients of ecological speciation in lake whitefish species pairs (Coregonus spp.)

(2010) SÉBASTIEN RENAUT et al.   MOLECULAR ECOLOGY

Linking the mitochondrial genotype to the organismal phenotype

(2010) J. W. O. BALLARD et al.   MOLECULAR ECOLOGY

Ancient lakes revisited: from the ecology to the genetics of speciation

(2010) MELANIA E. CRISTESCU et al.   MOLECULAR ECOLOGY

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Nuclear and mitochondrial DNA sequence data reveal the evolutionary history of Barbus (Cyprinidae) in the ancient lake systems of the Balkans

(2010) Silvia Marková et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Population Divergence ofBiwia zezera(Cyprinidae: Gobioninae) and the Discovery of a Cryptic Species, Based on Mitochondrial and Nuclear DNA Sequence Analyses

(2010) Katsutoshi Watanabe et al.   ZOOLOGICAL SCIENCE

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

GEDIMAP: a database of genetic diversity for Japanese freshwater fishes

(2009) Katsutoshi Watanabe et al.   ICHTHYOLOGICAL RESEARCH

Phylogenetic analysis of the Pacific cutthroat trout (Oncorhynchus clarki ssp.: Salmonidae) based on partial mtDNA ND4 sequences: A closer look at the highly fragmented inland species

(2009) Wade D. Wilson et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Pleistocene desiccation in East Africa bottlenecked but did not extirpate the adaptive radiation of Lake Victoria haplochromine cichlid fishes

(2009) K. R. Elmer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterizing natural variation using next-generation sequencing technologies

(2009) Yoav Gilad et al.   TRENDS IN GENETICS

Two highly divergent mitochondrial DNA lineages within Pseudogobio esocinus populations in central Honshu, Japan

(2008) Koji Tominaga et al.   ICHTHYOLOGICAL RESEARCH

Geological Dates and Molecular Rates: Fish DNA Sheds Light on Time Dependency

(2008) C. P. Burridge et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogeographic insights into cryptic glacial refugia

(2008) J PROVAN et al.   TRENDS IN ECOLOGY & EVOLUTION

Speciation, hybrid zones and phylogeography - or seeing genes in space and time

(2003) Godfrey M. Hewitt   MOLECULAR ECOLOGY