Transcriptomic comparison of invasive bigheaded carps (Hypophthalmichthys nobilisandHypophthalmichthys molitrix) and their hybrids

Evolution of the immune system influences speciation rates in teleost fishes

(2016) Martin Malmstrøm et al.   NATURE GENETICS

Transcriptome analysis revealed positive selection of immune-related genes in tilapia

(2015) Jun Xiao et al.   FISH & SHELLFISH IMMUNOLOGY

First insights into the giant panda (Ailuropoda melanoleuca) blood transcriptome: a resource for novel gene loci and immunogenetics

(2015) Lianming Du et al.   Molecular Ecology Resources

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Transcriptome resources for the white-footed mouse (Peromyscus leucopus): new genomic tools for investigating ecologically divergent urban and rural populations

(2014) Stephen E. Harris et al.   Molecular Ecology Resources

Activities at the Universal Protein Resource (UniProt)

(2014)   NUCLEIC ACIDS RESEARCH

Restriction site-associated DNA sequencing generates high-quality single nucleotide polymorphisms for assessing hybridization between bighead and silver carp in the United States and China

(2013) James T. Lamer et al.   Molecular Ecology Resources

Ensembl 2014

(2013) Paul Flicek et al.   NUCLEIC ACIDS RESEARCH

An Integrated Transcriptome-Wide Analysis of Cave and Surface Dwelling Astyanax mexicanus

(2013) Joshua B. Gross et al.   PLoS One

Transcriptome Analysis of Crucian Carp (Carassius auratus), an Important Aquaculture and Hypoxia-Tolerant Species

(2013) Xiaolin Liao et al.   PLoS One

Transcriptome analysis reveals the time of the fourth round of genome duplication in common carp (Cyprinus carpio)

(2012) Jin-Tu Wang et al.   BMC GENOMICS

Transcriptome Analysis of Silver Carp (Hypophthalmichthys molitrix) by Paired-End RNA Sequencing

(2012) B. Fu et al.   DNA RESEARCH

Molecular and developmental contributions to divergent pigment patterns in marine and freshwater sticklebacks

(2012) Anna K. Greenwood et al.   EVOLUTION & DEVELOPMENT

Characterization of Common Carp Transcriptome: Sequencing, De Novo Assembly, Annotation and Comparative Genomics

(2012) Peifeng Ji et al.   PLoS One

Transcriptome Analysis and SSR/SNP Markers Information of the Blunt Snout Bream (Megalobrama amblycephala)

(2012) Zexia Gao et al.   PLoS One

Rapid and adaptive evolution of MHC genes under parasite selection in experimental vertebrate populations

(2012) Christophe Eizaguirre et al.   Nature Communications

Comparative Transcriptomics of Eastern African Cichlid Fishes Shows Signs of Positive Selection and a Large Contribution of Untranslated Regions to Genetic Diversity

(2011) Laura Baldo et al.   Genome Biology and Evolution

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Introgressive Hybridization between Bighead Carp and Silver Carp in the Mississippi and Illinois Rivers

(2011) James Thomas Lamer et al.   NORTH AMERICAN JOURNAL OF FISHERIES MANAGEMENT

Tools for assessing kinship, population structure, phylogeography, and interspecific hybridization in Asian carps invasive to the Mississippi River, USA: isolation and characterization of novel tetranucleotide microsatellite DNA loci in silver carp Hypophthalmichthys molitrix

(2011) T. L. King et al.   Conservation Genetics Resources

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

The transcriptomics of sympatric dwarf and normal lake whitefish (Coregonus clupeaformis spp., Salmonidae) divergence as revealed by next-generation sequencing

(2010) JULIE JEUKENS et al.   MOLECULAR ECOLOGY

Rapid evolution and selection inferred from the transcriptomes of sympatric crater lake cichlid fishes

(2010) K. R. ELMER et al.   MOLECULAR ECOLOGY

Phylogenomic Analysis Resolves the Formerly Intractable Adaptive Diversification of the Endemic Clade of East Asian Cyprinidae (Cypriniformes)

(2010) Wenjing Tao et al.   PLoS One

Cryptic Variation between Species and the Basis of Hybrid Performance

(2010) Ulises Rosas et al.   PLOS BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

InParanoid 7: new algorithms and tools for eukaryotic orthology analysis

(2009) G. Ostlund et al.   NUCLEIC ACIDS RESEARCH

Diet overlap among two Asian carp and three native fishes in backwater lakes on the Illinois and Mississippi rivers

(2008) Schuyler J. Sampson et al.   BIOLOGICAL INVASIONS

Speciation reversal and biodiversity dynamics with hybridization in changing environments

(2007) OLE SEEHAUSEN et al.   MOLECULAR ECOLOGY