DNA context represents transcription regulation of the gene in mouse embryonic stem cells
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Title
DNA context represents transcription regulation of the gene in mouse embryonic stem cells
Authors
Keywords
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Journal
Scientific Reports
Volume 6, Issue 1, Pages -
Publisher
Springer Nature
Online
2016-04-14
DOI
10.1038/srep24343
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- (2013) Ronald M. Nelson et al. TRENDS IN GENETICS
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- (2013) Daniel C Kraushaar et al. GENOME BIOLOGY
- Characterization of genome-wide enhancer-promoter interactions reveals co-expression of interacting genes and modes of higher order chromatin organization
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- (2012) Xianjun Dong et al. GENOME BIOLOGY
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