Changes in variation at the MHC class II DQA locus during the final demise of the woolly mammoth

Synchronous genetic turnovers across Western Eurasia in Late Pleistocene collared lemmings

(2016) Eleftheria Palkopoulou et al.   GLOBAL CHANGE BIOLOGY

Complete Genomes Reveal Signatures of Demographic and Genetic Declines in the Woolly Mammoth

(2015) Eleftheria Palkopoulou et al.   CURRENT BIOLOGY

MHC variation reflects the bottleneck histories of New Zealand passerines

(2015) Jolene T. Sutton et al.   MOLECULAR ECOLOGY

From cheek swabs to consensus sequences: an A to Z protocol for high-throughput DNA sequencing of complete human mitochondrial genomes

(2014) Andrew C Clarke et al.   BMC GENOMICS

Environmental proxies of antigen exposure explain variation in immune investment better than indices of pace of life

(2014) Nicholas P. C. Horrocks et al.   OECOLOGIA

Low MHC variation in the polar bear: implications in the face of Arctic warming?

(2013) D. S. Weber et al.   ANIMAL CONSERVATION

Evolution of MHC class I genes in the endangered loggerhead sea turtle (Caretta caretta) revealed by 454 amplicon sequencing

(2013) Victor A Stiebens et al.   BMC EVOLUTIONARY BIOLOGY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Holarctic genetic structure and range dynamics in the woolly mammoth

(2013) E. Palkopoulou et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Robust Demographic Inference from Genomic and SNP Data

(2013) Laurent Excoffier et al.   PLoS Genetics

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Partial Genetic Turnover in Neandertals: Continuity in the East and Population Replacement in the West

(2012) L. Dalen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Selection Maintains MHC Diversity through a Natural Population Bottleneck

(2012) M. K. Oliver et al.   MOLECULAR BIOLOGY AND EVOLUTION

Microsatellite genotyping reveals end-Pleistocene decline in mammoth autosomal genetic variation

(2012) VERONICA NYSTRÖM et al.   MOLECULAR ECOLOGY

Considerable MHC Diversity Suggests That the Functional Extinction of Baiji Is Not Related to Population Genetic Collapse

(2012) Shixia Xu et al.   PLoS One

Loss of Mhc and Neutral Variation in Peary Caribou: Genetic Drift Is Not Mitigated by Balancing Selection or Exacerbated by Mhc Allele Distributions

(2012) Sabrina S. Taylor et al.   PLoS One

Serial population extinctions in a small mammal indicate Late Pleistocene ecosystem instability

(2012) S. Brace et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rapid loss of MHC class II variation in a bottlenecked population is explained by drift and loss of copy number variation

(2011) J. A. EIMES et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Disentangling the roles of natural selection and genetic drift in shaping variation at MHC immunity genes

(2011) JOLENE T. SUTTON et al.   MOLECULAR ECOLOGY

TempNet: a method to display statistical parsimony networks for heterochronous DNA sequence data

(2011) Stefan Prost et al.   Methods in Ecology and Evolution

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Major histocompatibility complex variation and evolution at a single, expressed DQA locus in two genera of elephants

(2010) Elizabeth A. Archie et al.   IMMUNOGENETICS

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Temporal genetic change in the last remaining population of woolly mammoth

(2010) V. Nystrom et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

How pathogens drive genetic diversity: MHC, mechanisms and misunderstandings

(2010) L. G. Spurgin et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genomic DNA Sequences from Mastodon and Woolly Mammoth Reveal Deep Speciation of Forest and Savanna Elephants

(2010) Nadin Rohland et al.   PLOS BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Does reduced MHC diversity decrease viability of vertebrate populations?

(2009) Jacek Radwan et al.   BIOLOGICAL CONSERVATION

MHC diversity in bottlenecked populations: a simulation model

(2009) Maciej Jan Ejsmond et al.   CONSERVATION GENETICS

First DNA sequences from Asian cave bear fossils reveal deep divergences and complex phylogeographic patterns

(2009) MICHAEL KNAPP et al.   MOLECULAR ECOLOGY

The Arctic as a model for anticipating, preventing, and mitigating climate change impacts on host–parasite interactions

(2009) Susan J. Kutz et al.   VETERINARY PARASITOLOGY

ADZE: a rarefaction approach for counting alleles private to combinations of populations

(2008) Z. A. Szpiech et al.   BIOINFORMATICS

The impact of climate change on large mammal distribution and extinction: Evidence from the last glacial/interglacial transition

(2008) Adrian M. Lister et al.   COMPTES RENDUS GEOSCIENCE

Out of America: Ancient DNA Evidence for a New World Origin of Late Quaternary Woolly Mammoths

(2008) Regis Debruyne et al.   CURRENT BIOLOGY

Diversifying and Purifying Selection in the Peptide Binding Region of DRB in Mammals

(2008) Rebecca F. Furlong et al.   JOURNAL OF MOLECULAR EVOLUTION

The Bering Land Bridge: a moisture barrier to the dispersal of steppe–tundra biota?

(2008) S ELIAS et al.   QUATERNARY SCIENCE REVIEWS