High frequency of +1 programmed ribosomal frameshifting in Euplotes octocarinatus

Changed in translation: mRNA recoding by −1 programmed ribosomal frameshifting

(2015) Neva Caliskan et al.   TRENDS IN BIOCHEMICAL SCIENCES

The Draft Assembly of the Radically Organized Stylonychia lemnae Macronuclear Genome

(2014) Samuel H. Aeschlimann et al.   Genome Biology and Evolution

The InterPro protein families database: the classification resource after 15 years

(2014) Alex Mitchell et al.   NUCLEIC ACIDS RESEARCH

Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops

(2014) T. Maehigashi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural insights into translational recoding by frameshift suppressor tRNASufJ

(2014) Crystal E. Fagan et al.   RNA

Characterization and Expression of the Gene Encoding En-MAPK1, an Intestinal Cell Kinase (ICK)-like Kinase Activated by the Autocrine Pheromone-Signaling Loop in the Polar Ciliate, Euplotes nobilii

(2013) Annalisa Candelori et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The Oxytricha trifallax Macronuclear Genome: A Complex Eukaryotic Genome with 16,000 Tiny Chromosomes

(2013) Estienne C. Swart et al.   PLOS BIOLOGY

Translational recoding in archaea

(2012) Beatrice Cobucci-Ponzano et al.   EXTREMOPHILES

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

GeneTack database: genes with frameshifts in prokaryotic genomes and eukaryotic mRNA sequences

(2012) Ivan Antonov et al.   NUCLEIC ACIDS RESEARCH

Mechanisms and implications of programmed translational frameshifting

(2012) Jonathan D. Dinman   Wiley Interdisciplinary Reviews-RNA

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Polyamine sensing by nascent ornithine decarboxylase antizyme stimulates decoding of its mRNA

(2011) Leo Kurian et al.   NATURE

Next-generation transcriptome assembly

(2011) Jeffrey A. Martin et al.   NATURE REVIEWS GENETICS

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

A Novel Protein Kinase from the Ciliate Euplotes raikovi with Close Structural Identity to the Mammalian Intestinal and Male-Germ Cell Kinases: Characterization and Functional Implications in the Autocrine Pheromone Signaling Loop

(2010) Adriana Vallesi et al.   PROTIST

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

The mitochondrial genomes of the ciliates Euplotes minuta and Euplotes crassus

(2009) Rob M de Graaf et al.   BMC GENOMICS

Connection between stop codon reassignment and frequent use of shifty stop frameshifting

(2009) H. Vallabhaneni et al.   RNA

Genetic Code Supports Targeted Insertion of Two Amino Acids by One Codon

(2009) A. A. Turanov et al.   SCIENCE