Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data
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Title
Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data
Authors
Keywords
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Journal
Scientific Reports
Volume 6, Issue 1, Pages -
Publisher
Springer Nature
Online
2016-12-06
DOI
10.1038/srep38699
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- (2015) Samuel A. Lee et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- RDF2Graph a tool to recover, understand and validate the ontology of an RDF resource
- (2015) Jesse CJ van Dam et al. Journal of Biomedical Semantics
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- (2014) T. Seemann BIOINFORMATICS
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- (2014) P. Jones et al. BIOINFORMATICS
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