Crystal structures reveal the molecular basis of ion translocation in sodium/proton antiporters

Transport domain unlocking sets the uptake rate of an aspartate transporter

(2015) Nurunisa Akyuz et al.   NATURE

Crystal structure of a phosphorylation-coupled vitamin C transporter

(2015) Ping Luo et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Crystal structure of the Alcanivorax borkumensis YdaH transporter reveals an unusual topology

(2015) Jani Reddy Bolla et al.   Nature Communications

Crystal structure of a phosphorylation-coupled vitamin C transporter

(2015) Ping Luo et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Structure and Function of Neisseria gonorrhoeae MtrF Illuminates a Class of Antimetabolite Efflux Pumps

(2015) Chih-Chia Su et al.   Cell Reports

MemStar: A one-shotEscherichia coli-based approach for high-level bacterial membrane protein production

(2014) Chiara Lee et al.   FEBS LETTERS

Species differences in bacterial NhaA Na+/H+exchangers

(2014) Octavian Călinescu et al.   FEBS LETTERS

Keeping It Simple, Transport Mechanism and pH Regulation in Na+/H+Exchangers

(2014) Octavian Călinescu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Crystal structure of the sodium–proton antiporter NhaA dimer and new mechanistic insights

(2014) Chiara Lee et al.   JOURNAL OF GENERAL PHYSIOLOGY

How good are my data and what is the resolution?

(2013) Philip R. Evans et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit

(2013) Sander Pronk et al.   BIOINFORMATICS

A two-domain elevator mechanism for sodium/proton antiport

(2013) Chiara Lee et al.   NATURE

Structural basis of the alternating-access mechanism in a bile acid transporter

(2013) Xiaoming Zhou et al.   NATURE

Traditional and emerging roles for the SLC9 Na+/H+ exchangers

(2013) Daniel G. Fuster et al.   PFLUGERS ARCHIV-EUROPEAN JOURNAL OF PHYSIOLOGY

The Unwound Portion Dividing Helix IV of NhaA Undergoes a Conformational Change at Physiological pH and Lines the Cation Passage

(2012) Abraham Rimon et al.   BIOCHEMISTRY

Bendix: intuitive helix geometry analysis and abstraction

(2012) A. C. E. Dahl et al.   BIOINFORMATICS

Revealing the Ligand Binding Site of NhaA Na+/H+Antiporter and Its pH Dependence

(2012) Michal Maes et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Molecular Dynamics Simulations of Phosphatidylcholine Membranes: A Comparative Force Field Study

(2012) Thomas J. Piggot et al.   Journal of Chemical Theory and Computation

Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone ϕ, ψ and Side-Chain χ1 and χ2 Dihedral Angles

(2012) Robert B. Best et al.   Journal of Chemical Theory and Computation

Conformational changes in NhaA Na+/H+antiporter

(2012) Lena Kozachkov et al.   MOLECULAR MEMBRANE BIOLOGY

Crystal structure of a concentrative nucleoside transporter from Vibrio cholerae at 2.4 Å

(2012) Zachary Lee Johnson et al.   NATURE

Transport Mechanism and pH Regulation of the Na+/H+Antiporter NhaA fromEscherichia coli

(2011) Thomas Mager et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

From Coarse Grained to Atomistic: A Serial Multiscale Approach to Membrane Protein Simulations

(2011) Phillip J. Stansfeld et al.   Journal of Chemical Theory and Computation

Improved Treatment of Ligands and Coupling Effects in Empirical Calculation and Rationalization of pKaValues

(2011) Chresten R. Søndergaard et al.   Journal of Chemical Theory and Computation

MDAnalysis: A toolkit for the analysis of molecular dynamics simulations

(2011) Naveen Michaud-Agrawal et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Crystal structure of a bacterial homologue of the bile acid sodium symporter ASBT

(2011) Nien-Jen Hu et al.   NATURE

Crystal structure of a phosphorylation-coupled saccharide transporter

(2011) Yu Cao et al.   NATURE

Site-directed tryptophan fluorescence reveals two essential conformational changes in the Na+/H+ antiporter NhaA

(2011) L. Kozachkov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

XDS

(2010) Wolfgang Kabsch   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

PHENIX: a comprehensive Python-based system for macromolecular structure solution

(2010) Paul D. Adams et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Update of the CHARMM All-Atom Additive Force Field for Lipids: Validation on Six Lipid Types

(2010) Jeffery B. Klauda et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Erratum to “Conformations of NhaA, the Na+/H+ Exchanger from Escherichia coli, in the pH-Activated and Ion-Translocating States” [J. Mol. Biol. 386 (2009) 351–385]

(2009) Matthias Appel et al.   JOURNAL OF MOLECULAR BIOLOGY

Functional asymmetry of the F0motor in bacterial ATP synthases

(2009) Alexander Wiedenmann et al.   MOLECULAR MICROBIOLOGY

Transport mechanism of a bacterial homologue of glutamate transporters

(2009) Nicolas Reyes et al.   NATURE

Tuning Escherichia coli for membrane protein overexpression

(2008) S. Wagner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Coarse-Grained MD Simulations of Membrane Protein-Bilayer Self-Assembly

(2008) Kathryn A. Scott et al.   STRUCTURE

P-LINCS:  A Parallel Linear Constraint Solver for Molecular Simulation

(2007) Berk Hess   Journal of Chemical Theory and Computation