bSiteFinder, an improved protein-binding sites prediction server based on structural alignment: more accurate and less time-consuming

iDrug-Target: predicting the interactions between drug compounds and target proteins in cellular networking via benchmark dataset optimization approach

(2015) Xuan Xiao et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Computational Prediction of a Putative Binding Site on Drp1: Implications for Antiparkinsonian Therapy

(2014) Hanumanthappa Pradeep et al.   Journal of Chemical Information and Modeling

Protein–ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment

(2013) Jianyi Yang et al.   BIOINFORMATICS

LISE: a server using ligand-interacting and site-enriched protein triangles for prediction of ligand-binding sites

(2013) Zhong-Ru Xie et al.   NUCLEIC ACIDS RESEARCH

SCOPe: Structural Classification of Proteins—extended, integrating SCOP and ASTRAL data and classification of new structures

(2013) Naomi K. Fox et al.   NUCLEIC ACIDS RESEARCH

Ligand-binding site prediction using ligand-interacting and binding site-enriched protein triangles

(2012) Zhong-Ru Xie et al.   BIOINFORMATICS

BioJava: an open-source framework for bioinformatics in 2012

(2012) A. Prlic et al.   BIOINFORMATICS

COFACTOR: an accurate comparative algorithm for structure-based protein function annotation

(2012) Ambrish Roy et al.   NUCLEIC ACIDS RESEARCH

FTSite: high accuracy detection of ligand binding sites on unbound protein structures

(2011) Chi-Ho Ngan et al.   BIOINFORMATICS

A new protein-ligand binding sites prediction method based on the integration of protein sequence conservation information

(2011) Tianli Dai et al.   BMC BIOINFORMATICS

Prediction of Active Site Cleft Using Support Vector Machines

(2010) Shrihari Sonavane et al.   Journal of Chemical Information and Modeling

3DLigandSite: predicting ligand-binding sites using similar structures

(2010) Mark N. Wass et al.   NUCLEIC ACIDS RESEARCH

Protein interactions and ligand binding: From protein subfamilies to functional specificity

(2010) A. Rausell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

FINDSITE: a combined evolution/structure-based approach to protein function prediction

(2009) J. Skolnick et al.   BRIEFINGS IN BIOINFORMATICS

Rational drug design

(2009) Soma Mandal et al.   EUROPEAN JOURNAL OF PHARMACOLOGY

Protein-binding site prediction based on three-dimensional protein modeling

(2009) Mina Oh et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Predicting druggable binding sites at the protein–protein interface

(2008) Jonathan C. Fuller et al.   DRUG DISCOVERY TODAY

MAMMOTH (Matching molecular models obtained from theory): An automated method for model comparison

(2002) Angel R. Ortiz et al.   PROTEIN SCIENCE