Gene regulation knowledge commons: community action takes care of DNA binding transcription factors

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

The Reactome pathway Knowledgebase

(2015) Antonio Fabregat et al.   NUCLEIC ACIDS RESEARCH

A method for increasing expressivity of Gene Ontology annotations using a compositional approach

(2014) Rachael P Huntley et al.   BMC BIOINFORMATICS

TFClass: a classification of human transcription factors and their rodent orthologs

(2014) Edgar Wingender et al.   NUCLEIC ACIDS RESEARCH

TFcheckpoint: a curated compendium of specific DNA-binding RNA polymerase II transcription factors

(2013) Konika Chawla et al.   BIOINFORMATICS

The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases

(2013) Sandra Orchard et al.   NUCLEIC ACIDS RESEARCH

An integrated encyclopedia of DNA elements in the human genome

(2012)   NATURE

Gene Ontology Annotations and Resources

(2012)   NUCLEIC ACIDS RESEARCH

Molecular interaction databases

(2012) Sandra Orchard   PROTEOMICS

Experimental strategies for studying transcription factor-DNA binding specificities

(2011) M. Geertz et al.   Briefings in Functional Genomics

The value of data

(2011) Barend Mons et al.   NATURE GENETICS

PSICQUIC and PSISCORE: accessing and scoring molecular interactions

(2011) Bruno Aranda et al.   NATURE METHODS

AnimalTFDB: a comprehensive animal transcription factor database

(2011) H.-M. Zhang et al.   NUCLEIC ACIDS RESEARCH

The IntAct molecular interaction database in 2012

(2011) S. Kerrien et al.   NUCLEIC ACIDS RESEARCH

A census of human transcription factors: function, expression and evolution

(2009) Juan M. Vaquerizas et al.   NATURE REVIEWS GENETICS

TFCat: the curated catalog of mouse and human transcription factors

(2009) Debra L Fulton et al.   GENOME BIOLOGY