AuDis: an automatic CRF-enhanced disease normalization in biomedical text

Curatable Named-Entity Recognition Using Semantic Relations

(2015) Yi-Yu Hsu et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

GNormPlus: An Integrative Approach for Tagging Genes, Gene Families, and Protein Domains

(2015) Chih-Hsuan Wei et al.   Biomed Research International

NCBI disease corpus: A resource for disease name recognition and concept normalization

(2014) Rezarta Islamaj Doğan et al.   JOURNAL OF BIOMEDICAL INFORMATICS

The Comparative Toxicogenomics Database's 10th year anniversary: update 2015

(2014) Allan Peter Davis et al.   NUCLEIC ACIDS RESEARCH

DNorm: disease name normalization with pairwise learning to rank

(2013) R. Leaman et al.   BIOINFORMATICS

tmVar: a text mining approach for extracting sequence variants in biomedical literature

(2013) C.-H. Wei et al.   BIOINFORMATICS

ChemSpot: a hybrid system for chemical named entity recognition

(2012) Tim Rocktäschel et al.   BIOINFORMATICS

SR4GN: A Species Recognition Software Tool for Gene Normalization

(2012) Chih-Hsuan Wei et al.   PLoS One

MEDIC: a practical disease vocabulary used at the Comparative Toxicogenomics Database

(2012) A. P. Davis et al.   Database-The Journal of Biological Databases and Curation

The GNAT library for local and remote gene mention normalization

(2011) J. Hakenberg et al.   BIOINFORMATICS

OrganismTagger: detection, normalization and grounding of organism entities in biomedical documents

(2011) N. Naderi et al.   BIOINFORMATICS

Integrative analysis workflow for the structural and functional classification of C-type lectins

(2011) Geoffrey Koh et al.   BMC BIOINFORMATICS

Disease Ontology: a backbone for disease semantic integration

(2011) L. M. Schriml et al.   NUCLEIC ACIDS RESEARCH

PubMed and beyond: a survey of web tools for searching biomedical literature

(2011) Z. Lu   Database-The Journal of Biological Databases and Curation

OSCAR4: a flexible architecture for chemical text-mining

(2011) David M Jessop et al.   Journal of Cheminformatics

Toward an automatic method for extracting cancer- and other disease-related point mutations from the biomedical literature

(2010) Emily Doughty et al.   BIOINFORMATICS

LINNAEUS: A species name identification system for biomedical literature

(2010) Martin Gerner et al.   BMC BIOINFORMATICS

Semi-automatic semantic annotation of PubMed queries: A study on quality, efficiency, satisfaction

(2010) Aurélie Névéol et al.   JOURNAL OF BIOMEDICAL INFORMATICS

The Mycoplasma conjunctivae genome sequencing, annotation and analysis

(2009) Sandra P Calderon-Copete et al.   BMC BIOINFORMATICS

Integrating high dimensional bi-directional parsing models for gene mention tagging

(2008) C.-N. Hsu et al.   BIOINFORMATICS