- Home
- Publications
- Publication Search
- Publication Details
Title
ncRNA orthologies in the vertebrate lineage
Authors
Keywords
-
Journal
Database-The Journal of Biological Databases and Curation
Volume 2016, Issue -, Pages bav127
Publisher
Oxford University Press (OUP)
Online
2016-03-16
DOI
10.1093/database/bav127
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Rfam 12.0: updates to the RNA families database
- (2014) Eric P. Nawrocki et al. NUCLEIC ACIDS RESEARCH
- Infernal 1.1: 100-fold faster RNA homology searches
- (2013) E. P. Nawrocki et al. BIOINFORMATICS
- PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome
- (2013) Jaime Huerta-Cepas et al. NUCLEIC ACIDS RESEARCH
- TreeFam v9: a new website, more species and orthology-on-the-fly
- (2013) Fabian Schreiber et al. NUCLEIC ACIDS RESEARCH
- miRBase: annotating high confidence microRNAs using deep sequencing data
- (2013) Ana Kozomara et al. NUCLEIC ACIDS RESEARCH
- RAxML-Light: a tool for computing terabyte phylogenies
- (2012) A. Stamatakis et al. BIOINFORMATICS
- Genome-scale NCRNA homology search using a Hamming distance-based filtration strategy
- (2012) Yanni Sun et al. BMC BIOINFORMATICS
- C. elegans piRNAs Mediate the Genome-wide Surveillance of Germline Transcripts
- (2012) Heng-Chi Lee et al. CELL
- Birth and expression evolution of mammalian microRNA genes
- (2012) J. Meunier et al. GENOME RESEARCH
- Human MicroRNAs Originated from Two Periods at Accelerated Rates in Mammalian Evolution
- (2012) Hisakazu Iwama et al. MOLECULAR BIOLOGY AND EVOLUTION
- A beginner's guide to eukaryotic genome annotation
- (2012) Mark Yandell et al. NATURE REVIEWS GENETICS
- Rfam 11.0: 10 years of RNA families
- (2012) Sarah W. Burge et al. NUCLEIC ACIDS RESEARCH
- PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees
- (2012) Huaiyu Mi et al. NUCLEIC ACIDS RESEARCH
- piRNAs and siRNAs collaborate in Caenorhabditis elegans genome defense
- (2012) Allison C Billi et al. GENOME BIOLOGY
- BadiRate: estimating family turnover rates by likelihood-based methods
- (2011) P. Librado et al. BIOINFORMATICS
- Letter to the Editor: SeqXML and OrthoXML: standards for sequence and orthology information
- (2011) T. Schmitt et al. BRIEFINGS IN BIOINFORMATICS
- ncRNA- and Pc2 Methylation-Dependent Gene Relocation between Nuclear Structures Mediates Gene Activation Programs
- (2011) Liuqing Yang et al. CELL
- Non-coding RNAs in human disease
- (2011) Manel Esteller NATURE REVIEWS GENETICS
- Database resources of the National Center for Biotechnology Information
- (2011) E. W. Sayers et al. NUCLEIC ACIDS RESEARCH
- The genomic binding sites of a noncoding RNA
- (2011) M. D. Simon et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- RNAcentral: A vision for an international database of RNA sequences
- (2011) A. Bateman et al. RNA
- Count: evolutionary analysis of phylogenetic profiles with parsimony and likelihood
- (2010) M. Csuos BIOINFORMATICS
- webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browser
- (2010) Ari Löytynoja et al. BMC BIOINFORMATICS
- eHive: An Artificial Intelligence workflow system for genomic analysis
- (2010) Jessica Severin et al. BMC BIOINFORMATICS
- The pea aphid phylome: a complete catalogue of evolutionary histories and arthropod orthology and paralogy relationships for Acyrthosiphon pisum genes
- (2010) J. Huerta-Cepas et al. INSECT MOLECULAR BIOLOGY
- Pathogenic LRRK2 negatively regulates microRNA-mediated translational repression
- (2010) Stephan Gehrke et al. NATURE
- FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
- (2010) Morgan N. Price et al. PLoS One
- phyloXML: XML for evolutionary biology and comparative genomics
- (2009) Mira V Han et al. BMC BIOINFORMATICS
- Genome-wide analysis of chicken snoRNAs provides unique implications for the evolution of vertebrate snoRNAs
- (2009) Peng Shao et al. BMC GENOMICS
- Evolutionarily Stable Association of Intronic snoRNAs and microRNAs with Their Host Genes
- (2009) Marc P. Hoeppner et al. Genome Biology and Evolution
- Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
- (2009) Mitchell Guttman et al. NATURE
- Causes and consequences of microRNA dysregulation in cancer
- (2009) Carlo M. Croce NATURE REVIEWS GENETICS
- EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates
- (2008) A. J. Vilella et al. GENOME RESEARCH
- Retroposed SNOfall--A mammalian-wide comparison of platypus snoRNAs
- (2008) J. Schmitz et al. GENOME RESEARCH
- Most mammalian mRNAs are conserved targets of microRNAs
- (2008) R. C. Friedman et al. GENOME RESEARCH
- The Expression of MicroRNA miR-107 Decreases Early in Alzheimer's Disease and May Accelerate Disease Progression through Regulation of -Site Amyloid Precursor Protein-Cleaving Enzyme 1
- (2008) W.-X. Wang et al. JOURNAL OF NEUROSCIENCE
- Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of β-secretase
- (2008) Mohammad Ali Faghihi et al. NATURE MEDICINE
- miROrtho: computational survey of microRNA genes
- (2008) D. Gerlach et al. NUCLEIC ACIDS RESEARCH
- Loss of microRNA cluster miR-29a/b-1 in sporadic Alzheimer's disease correlates with increased BACE1/ -secretase expression
- (2008) S. S. Hebert et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis
- (2008) A. Loytynoja et al. SCIENCE
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now