Genome analysis of three Pneumocystis species reveals adaptation mechanisms to life exclusively in mammalian hosts

Evidence for Proinflammatory β-1,6 Glucans in the Pneumocystis carinii Cell Wall

(2015) Theodore J. Kottom et al.   INFECTION AND IMMUNITY

Comparative Genomics Suggests Primary Homothallism of Pneumocystis Species

(2015) João M. G. C. F. Almeida et al.   mBio

Co-recognition of β-glucan and chitin and programming of adaptive immunity to Aspergillus fumigatus

(2015) Nansalmaa Amarsaikhan et al.   Frontiers in Microbiology

Comparative Genomics Suggests That the Human Pathogenic Fungus Pneumocystis jirovecii Acquired Obligate Biotrophy through Gene Loss

(2014) Ousmane H. Cissé et al.   Genome Biology and Evolution

Pneumocystis Encodes a Functional Endo-β-1,3-glucanase That is Expressed Exclusively in Cysts

(2014) Geetha Kutty et al.   JOURNAL OF INFECTIOUS DISEASES

Comparative Genomics of Pneumocystis Species Suggests the Absence of Genes for myo- Inositol Synthesis and Reliance on Inositol Transport and Metabolism

(2014) Aleksey Porollo et al.   mBio

A Relay Network of Extracellular Heme-Binding Proteins Drives C. albicans Iron Acquisition from Hemoglobin

(2014) Galit Kuznets et al.   PLoS Pathogens

Sequencing and characterization of the complete mitochondrial genomes of three Pneumocystis species provide new insights into divergence between human and rodent Pneumocystis

(2013) Liang Ma et al.   FASEB JOURNAL

CX3CR1-dependent renal macrophage survival promotes Candida control and host survival

(2013) Michail S. Lionakis et al.   JOURNAL OF CLINICAL INVESTIGATION

Glycoproteomic Analysis of the Secretome of Human Endothelial Cells

(2013) Xiaoke Yin et al.   MOLECULAR & CELLULAR PROTEOMICS

Genome Sequencing of the Plant Pathogen Taphrina deformans, the Causal Agent of Peach Leaf Curl

(2013) O. H. Cisse et al.   mBio

Discordant antibody and cellular responses to Pneumocystis major surface glycoprotein variants in mice

(2012) Lisa R Bishop et al.   BMC IMMUNOLOGY

CTCF: from insulators to alternative splicing regulation

(2012) Alberto R Kornblihtt   CELL RESEARCH

Outbreaks of Pneumocystis Pneumonia in 2 Renal Transplant Centers Linked to a Single Strain of Pneumocystis: Implications for Transmission and Virulence

(2012) M. Sassi et al.   CLINICAL INFECTIOUS DISEASES

Colonization by Pneumocystis jirovecii and Its Role in Disease

(2012) A. Morris et al.   CLINICAL MICROBIOLOGY REVIEWS

HIV Infection and Antiretroviral Therapy Have Divergent Effects on Mitochondria in Adipose Tissue

(2012) Caryn G. Morse et al.   JOURNAL OF INFECTIOUS DISEASES

Chitinases in Pneumocystis carinii pneumonia

(2012) Leah R. Villegas et al.   MEDICAL MICROBIOLOGY AND IMMUNOLOGY

De Novo Assembly of the Pneumocystis jirovecii Genome from a Single Bronchoalveolar Lavage Fluid Specimen from a Patient

(2012) O. H. Cisse et al.   mBio

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Comparative Functional Genomics of the Fission Yeasts

(2011) N. Rhind et al.   SCIENCE

Hybrid selection for sequencing pathogen genomes from clinical samples

(2011) Alexandre Melnikov et al.   GENOME BIOLOGY

Comparative Genomics and the Evolution of Pathogenicity in Human Pathogenic Fungi

(2010) Gary P. Moran et al.   EUKARYOTIC CELL

The Reduced Genome of the Parasitic Microsporidian Enterocytozoon bieneusi Lacks Genes for Core Carbon Metabolism

(2010) Patrick J. Keeling et al.   Genome Biology and Evolution

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Dectin-2 Recognition of α-Mannans and Induction of Th17 Cell Differentiation Is Essential for Host Defense against Candida albicans

(2010) Shinobu Saijo et al.   IMMUNITY

Comprehensive comparative analysis of strand-specific RNA sequencing methods

(2010) Joshua Z Levin et al.   NATURE METHODS

Echinocandin Treatment of Pneumocystis Pneumonia in Rodent Models Depletes Cysts Leaving Trophic Burdens That Cannot Transmit the Infection

(2010) Melanie T. Cushion et al.   PLoS One

Comparative Genomics Suggests that the Fungal Pathogen Pneumocystis Is an Obligate Parasite Scavenging Amino Acids from Its Host's Lungs

(2010) Philippe M. Hauser et al.   PLoS One

Characterization of PCEng2, a β-1,3-Endoglucanase Homolog inPneumocystis cariniiwith Activity in Cell Wall Regulation

(2009) Leah R. Villegas et al.   AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fungal mechanisms for host iron acquisition

(2009) Daniel Kornitzer   CURRENT OPINION IN MICROBIOLOGY

Carbonic anhydrases in fungi

(2009) S. Elleuche et al.   MICROBIOLOGY-SGM

Common strategies for antigenic variation by bacterial, fungal and protozoan pathogens

(2009) Kirk W. Deitsch et al.   NATURE REVIEWS MICROBIOLOGY

Transcriptome analysis by strand-specific sequencing of complementary DNA

(2009) Dmitri Parkhomchuk et al.   NUCLEIC ACIDS RESEARCH

ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads

(2009) Iain MacCallum et al.   GENOME BIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Dendritic Cell Interaction withCandida albicansCritically Depends onN-Linked Mannan

(2008) Alessandra Cambi et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Variation in the Major Surface Glycoprotein Genes inPneumocystis jirovecii

(2008) Geetha Kutty et al.   JOURNAL OF INFECTIOUS DISEASES