4.8 Article

Efficient conversion of primary azides to aldehydes catalyzed by active site variants of myoglobin

Journal

CHEMICAL SCIENCE
Volume 7, Issue 1, Pages 234-239

Publisher

ROYAL SOC CHEMISTRY
DOI: 10.1039/c5sc02857d

Keywords

-

Funding

  1. U.S. National Institute of Health grant [GM098628]
  2. U.S. National Science Foundation grant [CHE-0946653]

Ask authors/readers for more resources

The oxidation of primary azides to aldehydes constitutes a convenient but underdeveloped transformation for which no efficient methods are available. Here, we demonstrate that engineered variants of the hemoprotein myoglobin can catalyze this transformation with high efficiency (up to 8500 turnovers) and selectivity across a range of structurally diverse aryl-substituted primary azides. Mutagenesis of the 'distal' histidine residue was particularly effective in enhancing the azide oxidation reactivity of myoglobin, enabling these reactions to proceed in good to excellent yields (37-89%) and to be carried out at a synthetically useful scale. Kinetic isotope effect, isotope labeling, and substrate binding experiments support a mechanism involving heme-catalyzed decomposition of the organic azide followed by alpha hydrogen deprotonation to generate an aldimine which, upon hydrolysis, releases the aldehyde product. This work provides the first example of a biocatalytic azide-to-aldehyde conversion and expands the range of non-native chemical transformations accessible through hemoprotein-mediated catalysis.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.8
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Chemistry, Organic

Selective Functionalization of Aliphatic Amines via Myoglobin-Catalyzed Carbene N-H Insertion

Viktoria Steck, Gopeekrishnan Sreenilayam, Rudi Fasan

SYNLETT (2020)

Article Oncology

Blocking SHH/Patched Interaction Triggers Tumor Growth Inhibition through Patched-Induced Apoptosis

Pierre-Antoine Bissey, Pauline Mathot, Catherine Guix, Melissa Jasmin, Isabelle Goddard, Clelia Costechareyre, Nicolas Gadot, Jean-Guy Delcros, Sachitanand M. Mali, Rudi Fasan, Andre-Patrick Arrigo, Robert Dante, Gabriel Ichim, Patrick Mehlen, Joanna Fombonne

CANCER RESEARCH (2020)

Article Chemistry, Multidisciplinary

MOrPH-PhD: An Integrated Phage Display Platform for the Discovery of Functional Genetically Encoded Peptide Macrocycles

Andrew E. Owens, Jacob A. Iannuzzelli, Yu Gu, Rudi Fasan

ACS CENTRAL SCIENCE (2020)

Article Biochemistry & Molecular Biology

C-H Amination via Nitrene Transfer Catalyzed by Mononuclear Non-Heme Iron-Dependent Enzymes

Maria Agustina Vila, Viktoria Steck, Sonia Rodriguez Giordano, Ignacio Carrera, Rudi Fasan

CHEMBIOCHEM (2020)

Article Chemistry, Multidisciplinary

Mechanism-Guided Design and Discovery of Efficient Cytochrome P450-Derived C-H Amination Biocatalysts

Viktoria Steck, Joshua N. Kolev, Xinkun Ren, Rudi Fasan

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2020)

Article Biochemistry & Molecular Biology

Organic solvent stability and long-term storage of myoglobin-based carbene transfer biocatalysts

Alfons J. Pineda-Knauseder, David A. Vargas, Rudi Fasan

BIOTECHNOLOGY AND APPLIED BIOCHEMISTRY (2020)

Article Biochemistry & Molecular Biology

Co-crystal structures of HIV TAR RNA bound to lab-evolved proteins show key roles for arginine relevant to the design of cyclic peptide TAR inhibitors

Sai Shashank Chavali, Sachitanand M. Mali, Jermaine L. Jenkins, Rudi Fasan, Joseph E. Wedekind

JOURNAL OF BIOLOGICAL CHEMISTRY (2020)

Article Chemistry, Organic

Mechanistic Investigations for the Formation of Active Hexafluoroisopropyl Benzoates Involving Aza-Oxyallyl Cation and Anthranils

Anirban Mukherjee, Arshad J. Ansari, S. Rajagopala Reddy, Gourab Kanti Das, Ritesh Singh

ASIAN JOURNAL OF ORGANIC CHEMISTRY (2020)

Article Chemistry, Medicinal

Identification of Potent and Selective Inhibitors of Fat Mass Obesity-Associated Protein Using a Fragment-Merging Approach

Muthuraj Prakash, Yukihiro Itoh, Yoshie Fujiwara, Yukari Takahashi, Yuri Takada, Paolo Mellini, Elghareeb E. Elboray, Mitsuhiro Terao, Yasunobu Yamashita, Chika Yamamoto, Takao Yamaguchi, Masayuki Kotoku, Yuki Kitao, Ritesh Singh, Rohini Roy, Satoshi Obika, Makoto Oba, Dan Ohtan Wang, Takayoshi Suzuki

Summary: This study aimed to design novel FTO-selective inhibitors by merging fragments of previously reported FTO inhibitors, resulting in compound 11b selectively inhibiting FTO. Treatment with a prodrug of 11b decreased the viability of acute monocytic leukemia cells, altered the level of the FTO substrate N-6-methyladenosine in mRNA, and induced changes in expression of FTO target genes MYC and RARA.

JOURNAL OF MEDICINAL CHEMISTRY (2021)

Article Chemistry, Inorganic & Nuclear

Regioselectivity in metalloradical catalyzed C-H bond activation: A theoretical study

Anirban Mukherjee, Ritesh Singh, Kishor D. Mane, Gourab Kanti Das

Summary: Pure quantum mechanical calculations were used to determine the regioselectivity under metalloradical catalysis by Co(II)-porphyrin. The study found that regioselectivity is inherent to the aminyl radical generated from the sulfamoyl azide substrate. Different conformations for the transition state were analyzed to find the most stable conformation for preferable selectivity, in agreement with experimental results.

JOURNAL OF ORGANOMETALLIC CHEMISTRY (2022)

Article Chemistry, Organic

3d-transition metal catalyzed C-H to C-N bond formation: An update

Ritesh Singh, Elagandhula Sathish, Ashis K. Gupta, Sophiya Goyal

Summary: Direct C-H bond amination is an emerging area of research in synthetic chemistry, with the use of 3d transition metals as catalytic promoters for C-H to C-N bond formation. The update showcases recent developments, outlines the scope and limitations of the methods developed, and highlights the focus areas for future research.

TETRAHEDRON (2021)

Review Chemistry, Organic

Aza-oxyallyl Cations and Their Applications in (3+m) Cycloaddition Reactions

Deeksha, Ritesh Singh

Summary: Aza-oxyallyl cations have diverse reactivity profiles for constructing N-scaffolds of biological interest and recent studies have reported new variations in their reactivity, making them versatile tools for organic synthesis.

EUROPEAN JOURNAL OF ORGANIC CHEMISTRY (2022)

Article Chemistry, Multidisciplinary

Metal free amination of congested and functionalized alkyl bromides at room temperature

Arshad J. Ansari, Ayushi Yadav, Anirban Mukherjee, Elagandhula Sathish, Kommu Nagesh, Ritesh Singh

CHEMICAL COMMUNICATIONS (2020)

Article Chemistry, Multidisciplinary

Expanded toolbox for directing the biosynthesis of macrocyclic peptides in bacterial cells

Jacob A. Iannuzzelli, Rudi Fasan

CHEMICAL SCIENCE (2020)

Article Chemistry, Multidisciplinary

Iodide oxidation by ozone at the surface of aqueous microdroplets

Alexander M. Prophet, Kritanjan Polley, Gary J. Van Berkel, David T. Limmer, Kevin R. Wilson

Summary: The oxidation kinetics of iodide by ozone at the air-water interface is studied in single microdroplets. Molecular simulations and kinetic modeling are used to understand the underlying multiphase mechanism.

CHEMICAL SCIENCE (2024)

Article Chemistry, Multidisciplinary

Aggregate assembly of ferrocene functionalized indium-oxo clusters

Rong Zhang, Jiajing Lan, Fei Wang, Shumei Chen, Jian Zhang

Summary: By utilizing 1,1'-ferrocene dicarboxylic acid as a chelating and surface protection ligand, we have synthesized multi-nuclear indium oxide clusters with varying nuclear sizes, including heptanuclear and thirteen-nuclear clusters. These clusters possess labile coordination sites, allowing for structural modification and self-assembly, resulting in the formation of various cluster structures.

CHEMICAL SCIENCE (2024)

Article Chemistry, Multidisciplinary

Cucurbituril-based supramolecular host-guest complexes: single-crystal structures and dual-state fluorescence enhancement

Hui Wang, Hui Liu, Mingsen Wang, Jiaheng Hou, Yongjun Li, Yuancheng Wang, Yingjie Zhao

Summary: Two supramolecular complexes were prepared using CBs and M1, and their single-crystal structures were analyzed by SCXRD. The unexpected 1:2 self-assembly structure between M1 and CB[8] was discovered for the first time. These complexes exhibit unique photophysical properties and provide valuable information about the structure and photophysical properties of supramolecular complexes.

CHEMICAL SCIENCE (2024)

Article Chemistry, Multidisciplinary

Engineering of cell-surface receptors for analysis of receptor internalization and detection of receptor-specific glycosylation

Chang-Hee Lee, Sookil Park, Sanggil Kim, Ji Young Hyun, Hyun Soo Lee, Injae Shin

Summary: The epidermal growth factor receptor (EGFR) is a cell-surface glycoprotein involved in cell proliferation and tumor development. This study used a fluorescently labeled EGFR to investigate its time-dependent endocytosis in live cells and found that appended glycans affect EGFR internalization. Additionally, the study detected sialic acid residues attached to EGFR on the live cell surface using FRET-based imaging. This research provides valuable insights into the cellular functions of EGFR.

CHEMICAL SCIENCE (2024)

Article Chemistry, Multidisciplinary

Ultrasensitive detection of aromatic water pollutants through protein immobilization driven organic electrochemical transistors

Subhankar Sahu, Lokesh Kumar, Sumita Das, Dipti Gupta, Ruchi Anand

Summary: This study proposes a strategy that combines organic electronics with biosensor scaffolds to create a compact device for monitoring environmental aromatic pollution. By coupling biosensing protein MopR with an organic electrochemical transistor (OECT), a sensor module capable of efficient detection of phenol was designed. Exclusive phenol detection with minimal loss of sensitivity could be achieved in complex pollutant mixtures and real environmental samples.

CHEMICAL SCIENCE (2024)

Review Chemistry, Multidisciplinary

NiH-catalyzed C-N bond formation: insights and advancements in hydroamination of unsaturated hydrocarbons

Changseok Lee, Hyung-Joon Kang, Sungwoo Hong

Summary: The formation of C-N bonds through hydroamination reactions catalyzed by nickel hydrides has been a topic of recent interest. This approach offers a way to efficiently transform a variety of alkene and alkyne substrates into compounds enriched with C-N bonds. The review provides a concise overview of the underlying reaction mechanisms and aims to stimulate further progress in NiH-catalytic techniques and catalyst design.

CHEMICAL SCIENCE (2024)

Article Chemistry, Multidisciplinary

Selective FRET nano probe based on carbon dots and naphthalimide-isatin for the ratiometric detection of peroxynitrite in drug-induced liver injury

Yueci Wu, Lu-Lu Sun, Hai-Hao Han, Xiao-Peng He, Weiguo Cao, Tony D. James

Summary: Drug-induced liver injury (DILI) is a common cause of acute liver failure in the USA and Europe, but most cases can be recovered or prevented by discontinuing the offending drug. Recent research has found that peroxynitrite (ONOO-) can be used as a potential indicator for early diagnosis of DILI, and there is an urgent need to establish a method to detect and track peroxynitrite in DILI cases. In this study, a FRET-based nano fluorescent probe CD-N-I was developed, which showed high selectivity and sensitivity in detecting peroxynitrite. The probe successfully detected exogenous peroxynitrite in live cells and endogenous peroxynitrite in APAP-induced liver injury of HepG2 cells.

CHEMICAL SCIENCE (2024)

Article Chemistry, Multidisciplinary

Direct conversion of carboxylic acids to free thiols via radical relay acridine photocatalysis enabled by N-O bond cleavage

Dmitry L. Lipilin, Mikhail O. Zubkov, Mikhail D. Kosobokov, Alexander D. Dilman

Summary: This article describes a direct photocatalytic method for the thiolation of unprotected acids, which was previously challenging. By using a thionocarbonate reagent with an N-O bond, the efficient conversion of carboxylic acids to thiols is achieved.

CHEMICAL SCIENCE (2024)

Article Chemistry, Multidisciplinary

Towards routine organic structure determination using Raman microscopy

Jason Malenfant, Lucille Kuster, Yohann Gagne, Kouassi Signo, Maxime Denis, Sylvain Canesi, Mathieu Frenette

Summary: Raman microscopy can reveal compound-specific vibrational fingerprints without sample preparation. The combination of efficient theoretical calculations and a user-friendly software can accurately predict peak positions and provide match scores to assist with structure determination.

CHEMICAL SCIENCE (2024)

Article Chemistry, Multidisciplinary

Metal selectivity and translocation mechanism characterization in proteoliposomes of the transmembrane NiCoT transporter NixA from Helicobacter pylori

Jayoh A. Hernandez, Paul S. Micus, Sean Alec Lois Sunga, Luca Mazzei, Stefano Ciurli, Gabriele Meloni

Summary: Essential trace metals play crucial roles in the survival and virulence of bacterial pathogens. Helicobacter pylori requires nickel for colonization and persistence in the stomach, and NixA is an essential nickel transporter in this process. This study characterizes the selectivity and electrogenic nature of NixA-mediated nickel transport.

CHEMICAL SCIENCE (2024)

Article Chemistry, Multidisciplinary

A high-spin alkylperoxo-iron(III) complex with cis-anionic ligands: implications for the superoxide reductase mechanism

Tarali Devi, Kuheli Dutta, Jennifer Deutscher, Stefan Mebs, Uwe Kuhlmann, Michael Haumann, Beatrice Cula, Holger Dau, Peter Hildebrandt, Kallol Ray

Summary: This study emphasizes the importance of subtle electronic changes and secondary interactions in the stability of biologically relevant metal-dioxygen intermediates. It also shows that the role of the chloride ligand in stabilizing the Fe-III-(OOBu)-Bu-t moiety can extend to other anions, including the thiolate ligand.

CHEMICAL SCIENCE (2024)

Article Chemistry, Multidisciplinary

Effects of altered backbone composition on the folding kinetics and mechanism of an ultrafast-folding protein

Jacqueline R. Santhouse, Jeremy M. G. Leung, Lillian T. Chong, W. Seth Horne

Summary: By studying the folding kinetics and mechanism of the BdpA sequence, researchers found that altering the backbone connectivity can affect protein folding. This suggests that protein mimetic chains have a significant degree of plasticity in transitioning between unfolded and folded states.

CHEMICAL SCIENCE (2024)

Article Chemistry, Multidisciplinary

Strain induced reactivity of cyclic iminoboranes: the (2+2) cycloaddition of a 1H-1,3,2-diazaborepine with ethene

Divanshu Gupta, Ralf Einholz, Holger F. Bettinger

Summary: This study presents the first direct spectroscopic evidence of a cyclic seven-membered iminoborane. Compared to linear amino-iminoboranes, this cyclic iminoborane exhibits weakened bond strength and lower Lewis acidity value. The study suggests that the reduced ring strain of cyclic iminoborane prevents nitrogen fixation but allows facile (2 + 2) cycloaddition reaction with C2H4.

CHEMICAL SCIENCE (2024)

Article Chemistry, Multidisciplinary

Unveiling the topology of partially disordered micro-crystalline nitro-perylenediimide with X-aggregate stacking: an integrated approach

Renny Mathew, Aniruddha Mazumder, Praveen Kumar, Julie Matula, Sharmarke Mohamed, Petr Brazda, Mahesh Hariharan, Brijith Thomas

Summary: This study reveals the packing arrangement of partially disordered nitro-perylenediimide (NO2-PDI) using a synergistic approach that combines 3D ED, ssNMR, and DFT techniques. By overcoming these challenges, this methodology opens up new avenues for material characterization, driving exciting advancements in the field.

CHEMICAL SCIENCE (2024)