Ecogenomic survey of plant viruses infecting Tobacco by Next generation sequencing

Complete genome sequence of tobacco virus 1, a closterovirus from Nicotiana tabacum

(2016) Fang Wang et al.   ARCHIVES OF VIROLOGY

Population Analysis of Iranian Potato virus Y Isolates Using Complete Genome Sequence

(2016) Reza Pourrahim et al.   Plant Pathology Journal

Identification of Viruses and Viroids by Next-Generation Sequencing and Homology-Dependent and Homology-Independent Algorithms

(2015) Qingfa Wu et al.   Annual Review of Phytopathology

A novel grapevine badnavirus is associated with the Roditis leaf discoloration disease

(2015) Varvara I. Maliogka et al.   VIRUS RESEARCH

Using Signature Genes as Tools To Assess Environmental Viral Ecology and Diversity

(2014) Evelien M. Adriaenssens et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Occurrence of Cucumber mosaic virus Subgroups IA and IB Isolates in Tomatoes in Nigeria

(2014) A. B. Kayode et al.   PLANT DISEASE

Plant Virology and Next Generation Sequencing: Experiences with a Potyvirus

(2014) Monica A. Kehoe et al.   PLoS One

Development of a virus detection and discovery pipeline using next generation sequencing

(2014) Thien Ho et al.   VIROLOGY

Full-genome analyses of a Potato Virus Y (PVY) isolate infecting pepper (Capsicum annuum L.) in the Republic of South Africa

(2014) Vaneson Moodley et al.   VIRUS GENES

Crop immunity against viruses: outcomes and future challenges

(2014) Valérie Nicaise   Frontiers in Plant Science

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Association of a DNA Virus with Grapevines Affected by Red Blotch Disease in California

(2013) Maher Al Rwahnih et al.   PHYTOPATHOLOGY

Sequencing and Phylogenetic Analysis of Potato virus Y Liaoning Isolate in China

(2013) Fang WANG et al.   Journal of Integrative Agriculture

Population genetics of cucumber mosaic virus infecting medicinal, aromatic and ornamental plants from northern Italy

(2012) Salvatore Davino et al.   ARCHIVES OF VIROLOGY

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

(2012) Marcel H. Schulz et al.   BIOINFORMATICS

Viral Quasispecies Evolution

(2012) E. Domingo et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Phylogeography and Molecular Evolution of Potato virus Y

(2012) José M. Cuevas et al.   PLoS One

Advances in Plant Virus Evolution: Translating Evolutionary Insights into Better Disease Management

(2011) R. Acosta-Leal et al.   PHYTOPATHOLOGY

A new grapevine virus discovered by deep sequencing of virus- and viroid-derived small RNAs in Cv Pinot gris

(2011) Annalisa Giampetruzzi et al.   VIRUS RESEARCH

Genetic Diversity ofPotato virus YInfecting Tobacco Crops in China

(2010) Y. P. Tian et al.   PHYTOPATHOLOGY

Virgaviridae: a new family of rod-shaped plant viruses

(2009) Michael J. Adams et al.   ARCHIVES OF VIROLOGY

Sequence characteristics of potato virus Y recombinants

(2009) X. Hu et al.   JOURNAL OF GENERAL VIROLOGY

Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: A generic method for diagnosis, discovery and sequencing of viruses

(2009) Jan F. Kreuze et al.   VIROLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH