Genomic selection for wheat traits and trait stability

Extending the Marker × Environment Interaction Model for Genomic-Enabled Prediction and Genome-Wide Association Analysis in Durum Wheat

(2016) José Crossa et al.   CROP SCIENCE

Modeling Genotype × Environment Interaction for Genomic Selection with Unbalanced Data from a Wheat Breeding Program

(2016) Bettina Lado et al.   CROP SCIENCE

Genomic selection in a commercial winter wheat population

(2016) Sang He et al.   THEORETICAL AND APPLIED GENETICS

Stability analysis in Wheat: An application of additive main effects and multiplicative interaction

(2015) Saleem Noorul et al.   African Journal of Agricultural Research

First insights into the genotype–phenotype map of phenotypic stability in rye

(2015) Yu Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Increased Prediction Accuracy in Wheat Breeding Trials Using a Marker × Environment Interaction Genomic Selection Model

(2015) Marco Lopez-Cruz et al.   G3-Genes Genomes Genetics

Genomic Selection and Association Mapping in Rice (Oryza sativa): Effect of Trait Genetic Architecture, Training Population Composition, Marker Number and Statistical Model on Accuracy of Rice Genomic Selection in Elite, Tropical Rice Breeding Lines

(2015) Jennifer Spindel et al.   PLoS Genetics

Regularization Paths for Generalized Linear Models via Coordinate Descent

(2015) Jerome Friedman et al.   Journal of Statistical Software

Genomic Selection for Quantitative Adult Plant Stem Rust Resistance in Wheat

(2015) Jessica E. Rutkoski et al.   Plant Genome

Potential of Association Mapping and Genomic Selection to Explore PI 88788 Derived Soybean Cyst Nematode Resistance

(2015) Yong Bao et al.   Plant Genome

Parametric bootstrap methods for testing multiplicative terms in GGE and AMMI models

(2014) Johannes Forkman et al.   BIOMETRICS

A Weighted AMMI Algorithm to Study Genotype-by-Environment Interaction and QTL-by-Environment Interaction

(2014) Paulo C. Rodrigues et al.   CROP SCIENCE

Genome-Wide Regression and Prediction with the BGLR Statistical Package

(2014) P. Perez et al.   GENETICS

Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array

(2014) Shichen Wang et al.   PLANT BIOTECHNOLOGY JOURNAL

Genomic selection: genome-wide prediction in plant improvement

(2014) Zeratsion Abera Desta et al.   TRENDS IN PLANT SCIENCE

Genomic selection in crops, trees and forages: a review

(2014) Z. Lin et al.   Crop & Pasture Science

Comparing Biplot Multivariate Analyses with Eberhart and Russell’ method for genotype x environment interaction

(2014) H. Namorato et al.   Crop Breeding and Applied Biotechnology

Using Genomic Prediction to Characterize Environments and Optimize Prediction Accuracy in Applied Breeding Data

(2013) Nicolas Heslot et al.   CROP SCIENCE

Genomic selection allowing for marker-by-environment interaction

(2013) Torben Schulz-Streeck et al.   PLANT BREEDING

Integrating environmental covariates and crop modeling into the genomic selection framework to predict genotype by environment interactions

(2013) Nicolas Heslot et al.   THEORETICAL AND APPLIED GENETICS

A stage-wise approach for the analysis of multi-environment trials

(2012) Hans-Peter Piepho et al.   BIOMETRICAL JOURNAL

Genomewide Selection versus Marker-assisted Recurrent Selection to Improve Grain Yield and Stover-quality Traits for Cellulosic Ethanol in Maize

(2012) Jon M. Massman et al.   CROP SCIENCE

Accuracy of Genomic Selection Methods in a Standard Data Set of Loblolly Pine (Pinus taeda L.)

(2012) M. F. R. Resende et al.   GENETICS

Efficiency of genomic selection in a purebred pig male line

(2012) T. Tribout et al.   JOURNAL OF ANIMAL SCIENCE

The future of livestock breeding: genomic selection for efficiency, reduced emissions intensity, and adaptation

(2012) Ben J. Hayes et al.   TRENDS IN GENETICS

Evaluation of Genomic Prediction Methods for Fusarium Head Blight Resistance in Wheat

(2012) Jessica Rutkoski et al.   Plant Genome

Genomic Selection in Wheat Breeding using Genotyping-by-Sequencing

(2012) Jesse Poland et al.   Plant Genome

Genomic selection in plant breeding: from theory to practice

(2011) J.-L. Jannink et al.   Briefings in Functional Genomics

Identification and Validation of QTL for Grain Quality Traits in a Cross of Soft Wheat Cultivars Pioneer Brand 25R26 and Foster

(2011) Nathan Smith et al.   CROP SCIENCE

Genomic Selection Accuracy for Grain Quality Traits in Biparental Wheat Populations

(2011) Elliot L. Heffner et al.   CROP SCIENCE

Genomic Selection in Plant Breeding: A Comparison of Models

(2011) Nicolas Heslot et al.   CROP SCIENCE

Global trends of rapeseed grain yield stability and rapeseed-to-wheat yield ratio in the last four decades

(2011) Déborah P. Rondanini et al.   EUROPEAN JOURNAL OF AGRONOMY

Accuracy of genomic selection in European maize elite breeding populations

(2011) Yusheng Zhao et al.   THEORETICAL AND APPLIED GENETICS

Genomic Selection Accuracy using Multifamily Prediction Models in a Wheat Breeding Program

(2011) Elliot L. Heffner et al.   Plant Genome

Accuracy and Training Population Design for Genomic Selection on Quantitative Traits in Elite North American Oats

(2011) Franco G. Asoro et al.   Plant Genome

Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP

(2011) Jeffrey B. Endelman   Plant Genome

Genomic selection for durable stem rust resistance in wheat

(2010) Jessica E. Rutkoski et al.   EUPHYTICA

SNP Selection in genome-wide and candidate gene studies via penalized logistic regression

(2010) Kristin L. Ayers et al.   GENETIC EPIDEMIOLOGY

Prediction of Genetic Values of Quantitative Traits in Plant Breeding Using Pedigree and Molecular Markers

(2010) J. Crossa et al.   GENETICS

Raising yield potential of wheat. I. Overview of a consortium approach and breeding strategies

(2010) Matthew Reynolds et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genomic selection in forest tree breeding

(2010) Dario Grattapaglia et al.   Tree Genetics & Genomes

Genomic-Enabled Prediction Based on Molecular Markers and Pedigree Using the Bayesian Linear Regression Package in R

(2010) Paulino Pérez et al.   Plant Genome

Factors Affecting Accuracy From Genomic Selection in Populations Derived From Multiple Inbred Lines: A Barley Case Study

(2009) S. Zhong et al.   GENETICS

Invited review: Genomic selection in dairy cattle: Progress and challenges

(2009) B.J. Hayes et al.   JOURNAL OF DAIRY SCIENCE

Performance of Genomic Selection in Mice

(2008) A. Legarra et al.   GENETICS

The use of an AMMI model and its parameters to analyse yield stability in multi-environment trials

(2008) N. SABAGHNIA et al.   JOURNAL OF AGRICULTURAL SCIENCE