Contrasting elevational diversity patterns for soil bacteria between two ecosystems divided by the treeline

Soil microbial communities are shaped by plant-driven changes in resource availability during secondary succession

(2015) Lauren C. Cline et al.   ECOLOGY

Soil pH determines the alpha diversity but not beta diversity of soil fungal community along altitude in a typical Tibetan forest ecosystem

(2015) Jun-Tao Wang et al.   JOURNAL OF SOILS AND SEDIMENTS

Composition of fungal and bacterial communities in forest litter and soil is largely determined by dominant trees

(2015) Michaela Urbanová et al.   SOIL BIOLOGY & BIOCHEMISTRY

Integrated metagenomics and network analysis of soil microbial community of the forest timberline

(2015) Junjun Ding et al.   Scientific Reports

Soil bacterial diversity patterns and drivers along an elevational gradient on Shennongjia Mountain, China

(2015) Yuguang Zhang et al.   Microbial Biotechnology

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Contrasting elevational diversity patterns between eukaryotic soil microbes and plants

(2014) Congcong Shen et al.   ECOLOGY

Plant diversity predicts beta but not alpha diversity of soil microbes across grasslands worldwide

(2014) Suzanne M. Prober et al.   ECOLOGY LETTERS

The mid-domain effect in ectomycorrhizal fungi: range overlap along an elevation gradient on Mount Fuji, Japan

(2014) Yumiko Miyamoto et al.   ISME Journal

Plant and arbuscular mycorrhizal fungal (AMF) communities - which drives which?

(2014) Martin Zobel et al.   JOURNAL OF VEGETATION SCIENCE

Altitudinal Distribution Patterns of Soil Bacterial and Archaeal Communities Along Mt. Shegyla on the Tibetan Plateau

(2014) Jun-Tao Wang et al.   MICROBIAL ECOLOGY

Nitrogen limitation and microbial diversity at the treeline

(2014) Aurélie Thébault et al.   OIKOS

Global diversity and geography of soil fungi

(2014) L. Tedersoo et al.   SCIENCE

Inferring microbial interaction networks based on consensus similarity network fusion

(2014) XingPeng Jiang et al.   Science China-Life Sciences

High throughput sequencing analysis of biogeographical distribution of bacterial communities in the black soils of northeast China

(2014) Junjie Liu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil properties and tree species drive ß-diversity of soil bacterial communities

(2014) William J. Landesman et al.   SOIL BIOLOGY & BIOCHEMISTRY

Intragenomic Heterogeneity of 16S rRNA Genes Causes Overestimation of Prokaryotic Diversity

(2013) Dong-Lei Sun et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities

(2013) Ramiro Logares et al.   ENVIRONMENTAL MICROBIOLOGY

Low photosynthesis of treeline white spruce is associated with limited soil nitrogen availability in the Western Brooks Range, Alaska

(2013) Robert W. McNown et al.   FUNCTIONAL ECOLOGY

Strong elevational trends in soil bacterial community composition on Mt. Halla, South Korea

(2013) Dharmesh Singh et al.   SOIL BIOLOGY & BIOCHEMISTRY

Global variation in elevational diversity patterns

(2013) Qinfeng Guo et al.   Scientific Reports

Patterns of elevational beta diversity in micro- and macroorganisms

(2012) Jianjun Wang et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Soil pH drives the spatial distribution of bacterial communities along elevation on Changbai Mountain

(2012) Congcong Shen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Phylogenetic clustering increases with elevation for microbes

(2012) Jianjun Wang et al.   Environmental Microbiology Reports

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

The bacterial biogeography of British soils

(2011) Robert I. Griffiths et al.   ENVIRONMENTAL MICROBIOLOGY

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

A Hump-Backed Trend in Bacterial Diversity with Elevation on Mount Fuji, Japan

(2011) Dharmesh Singh et al.   MICROBIAL ECOLOGY

Regional and local patterns of ectomycorrhizal fungal diversity and community structure along an altitudinal gradient in the Hyrcanian forests of northern Iran

(2011) Mohammad Bahram et al.   NEW PHYTOLOGIST

Drivers of bacterial  -diversity depend on spatial scale

(2011) J. B. H. Martiny et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

SAM: a comprehensive application for Spatial Analysis in Macroecology

(2010) Thiago F. Rangel et al.   ECOGRAPHY

Microbes do not follow the elevational diversity patterns of plants and animals

(2010) Noah Fierer et al.   ECOLOGY

Contrasting patterns in elevational diversity between microorganisms and macroorganisms

(2010) Jianjun Wang et al.   JOURNAL OF BIOGEOGRAPHY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Are treelines advancing? A global meta-analysis of treeline response to climate warming

(2009) Melanie A. Harsch et al.   ECOLOGY LETTERS

Does grassland vegetation drive soil microbial diversity?

(2009) P. Millard et al.   NUTRIENT CYCLING IN AGROECOSYSTEMS

Environmental and spatial characterisation of bacterial community composition in soil to inform sampling strategies

(2009) Kate L. Baker et al.   SOIL BIOLOGY & BIOCHEMISTRY

Biogeographical patterns of soil bacterial communities

(2009) Samuel Dequiedt et al.   Environmental Microbiology Reports

The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems

(2008) Marcel G. A. van der Heijden et al.   ECOLOGY LETTERS

The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria

(2008) Graeme W. Nicol et al.   ENVIRONMENTAL MICROBIOLOGY

Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment

(2008) J. F. Biddle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbes on mountainsides: Contrasting elevational patterns of bacterial and plant diversity

(2008) J. A. Bryant et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA