The elusive quest for RNA knots

Synonymous Mutations Reduce Genome Compactness in Icosahedral ssRNA Viruses

(2015) Luca Tubiana et al.   BIOPHYSICAL JOURNAL

Absence of knots in known RNA structures

(2015) Cristian Micheletti et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

KnotProt: a database of proteins with knots and slipknots

(2014) Michal Jamroz et al.   NUCLEIC ACIDS RESEARCH

Evolution of the ribosome at atomic resolution

(2014) A. S. Petrov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Circular RNAs are a large class of animal RNAs with regulatory potency

(2013) Sebastian Memczak et al.   NATURE

Top3β is an RNA topoisomerase that works with fragile X syndrome protein to promote synapse formation

(2013) Dongyi Xu et al.   NATURE NEUROSCIENCE

Spontaneous network formation among cooperative RNA replicators

(2012) Nilesh Vaidya et al.   NATURE

McGenus: a Monte Carlo algorithm to predict RNA secondary structures with pseudoknots

(2012) Michaël Bon et al.   NUCLEIC ACIDS RESEARCH

Circular RNAs Are the Predominant Transcript Isoform from Hundreds of Human Genes in Diverse Cell Types

(2012) Julia Salzman et al.   PLoS One

Conservation of complex knotting and slipknotting patterns in proteins

(2012) J. I. Sulkowska et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Probing the Entanglement and Locating Knots in Ring Polymers: A Comparative Study of Different Arc Closure Schemes

(2012) Luca Tubiana et al.   PROGRESS OF THEORETICAL PHYSICS SUPPLEMENT

Circular RNAs are abundant, conserved, and associated with ALU repeats

(2012) W. R. Jeck et al.   RNA

The fractal globule as a model of chromatin architecture in the cell

(2011) Leonid A. Mirny   CHROMOSOME RESEARCH

TT2NE: a novel algorithm to predict RNA secondary structures with pseudoknots

(2011) Michaël Bon et al.   NUCLEIC ACIDS RESEARCH

Polymers with spatial or topological constraints: Theoretical and computational results

(2011) Cristian Micheletti et al.   PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS

Biophysics of Knotting

(2010) Dario Meluzzi et al.   Annual Review of Biophysics

Structures and folding pathways of topologically knotted proteins

(2010) Peter Virnau et al.   JOURNAL OF PHYSICS-CONDENSED MATTER

Knotted vs. Unknotted Proteins: Evidence of Knot-Promoting Loops

(2010) Raffaello Potestio et al.   PLoS Computational Biology

The dawn of the RNA World: Toward functional complexity through ligation of random RNA oligomers

(2009) C. Briones et al.   RNA

Knotted Fusion Proteins Reveal Unexpected Possibilities in Protein Folding

(2008) Anna L. Mallam et al.   MOLECULAR CELL

Predicting the sizes of large RNA molecules

(2008) A. M. Yoffe et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structure and Dynamics of Interphase Chromosomes

(2008) Angelo Rosa et al.   PLoS Computational Biology